Click here to switch to the map view.

The map label for this gene is 54295295

Identifier: 54295295

GI number: 54295295

Start: 2709431

End: 2710048

Strand: Direct

Name: 54295295

Synonym: lpl2380

Alternate gene names: NA

Gene position: 2709431-2710048 (Clockwise)

Preceding gene: 54295290

Following gene: 54295296

Centisome position: 80.98

GC content: 33.33

Gene sequence:

>618_bases
ATGTCTCAATTCAATTTTTTTGAAAAAAACCAGGCTTTTGATGAAAACAATTTCGAACAAAAATTGCAGGATGCAATCAA
TCTGATAAAACAAAATCAATCTTTTGTTGCAAGATTAGTGCTCGATGCGATAAATTCCAATCAAGTCACAGTAAGTACTT
TCTTTCAACTTACCCCAGATCATTACCAGAGAATGAAAACCATTATGAAAAAAGATTATCATACTACTCTTCCAAAAACT
TTCCCGCCTACAATGTCGGCGGTGCGTAAAATTGAGAAAGAACTGGATGGCATTATTTATGATAATCAACATATTTATAT
CAGTTCGACAAAAAGCATTGAAGAAATTGCCAAAACATTAATCCATGAAGTCTGTCATTTTTTAAATTCAGATCTTTACG
ATAAAGAAATGGAAACAGAAGAGTCAAAACTAGTCGGCTATAAAGATGAAGTAAGGGCATTTACAGCAGAAAAAATGTTT
GAAAAAAATAAAGGCTACCTGCTCAGAAGCGATATAAACCAAATACACGAAACGGTTACCGAACTATATCCTGAATTCAC
CGATCCGGAAAACCCAATATCAGGGTATATTTACAGTACTTTTGATAGCCCTTCTTAA

Upstream 100 bases:

>100_bases
ATTTTGAAAAATTACCCTCAGTATTGTTCATTAATTGAAGAAAGGTTACTATGAAATTGCATGGAAGAAATCATTAATAC
TGGATAATAGGAGAAAAGGA

Downstream 100 bases:

>100_bases
GGGCTGTTTACATTTTGCCAGCTTGAGTCGAAAAGCCTTGATTTTCGATCGCCGTAGTGGAACGTACAATGAAATGAGTT
AAAAAATCTACGTATCTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSQFNFFEKNQAFDENNFEQKLQDAINLIKQNQSFVARLVLDAINSNQVTVSTFFQLTPDHYQRMKTIMKKDYHTTLPKT
FPPTMSAVRKIEKELDGIIYDNQHIYISSTKSIEEIAKTLIHEVCHFLNSDLYDKEMETEESKLVGYKDEVRAFTAEKMF
EKNKGYLLRSDINQIHETVTELYPEFTDPENPISGYIYSTFDSPS

Sequences:

>Translated_205_residues
MSQFNFFEKNQAFDENNFEQKLQDAINLIKQNQSFVARLVLDAINSNQVTVSTFFQLTPDHYQRMKTIMKKDYHTTLPKT
FPPTMSAVRKIEKELDGIIYDNQHIYISSTKSIEEIAKTLIHEVCHFLNSDLYDKEMETEESKLVGYKDEVRAFTAEKMF
EKNKGYLLRSDINQIHETVTELYPEFTDPENPISGYIYSTFDSPS
>Mature_204_residues
SQFNFFEKNQAFDENNFEQKLQDAINLIKQNQSFVARLVLDAINSNQVTVSTFFQLTPDHYQRMKTIMKKDYHTTLPKTF
PPTMSAVRKIEKELDGIIYDNQHIYISSTKSIEEIAKTLIHEVCHFLNSDLYDKEMETEESKLVGYKDEVRAFTAEKMFE
KNKGYLLRSDINQIHETVTELYPEFTDPENPISGYIYSTFDSPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24010; Mature: 23879

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFNFFEKNQAFDENNFEQKLQDAINLIKQNQSFVARLVLDAINSNQVTVSTFFQLTPD
CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHCCHH
HYQRMKTIMKKDYHTTLPKTFPPTMSAVRKIEKELDGIIYDNQHIYISSTKSIEEIAKTL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHHH
IHEVCHFLNSDLYDKEMETEESKLVGYKDEVRAFTAEKMFEKNKGYLLRSDINQIHETVT
HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
ELYPEFTDPENPISGYIYSTFDSPS
HHCCCCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure 
SQFNFFEKNQAFDENNFEQKLQDAINLIKQNQSFVARLVLDAINSNQVTVSTFFQLTPD
CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHCCHH
HYQRMKTIMKKDYHTTLPKTFPPTMSAVRKIEKELDGIIYDNQHIYISSTKSIEEIAKTL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHHH
IHEVCHFLNSDLYDKEMETEESKLVGYKDEVRAFTAEKMFEKNKGYLLRSDINQIHETVT
HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
ELYPEFTDPENPISGYIYSTFDSPS
HHCCCCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA