Click here to switch to the map view.

The map label for this gene is 54295270

Identifier: 54295270

GI number: 54295270

Start: 2687571

End: 2688056

Strand: Direct

Name: 54295270

Synonym: lpl2355

Alternate gene names: NA

Gene position: 2687571-2688056 (Clockwise)

Preceding gene: 54295268

Following gene: 54295271

Centisome position: 80.33

GC content: 43.21

Gene sequence:

>486_bases
ATGATGAACACAGATAGCCACCCATTGCTTGCTATAGCAGCAGAAGAAGTCCCACCCCGTACCAAACCCTCTATTTATCC
TGAGCCATTCGCATCCATGATGGCTGGTCGTCAAAAACATGCATTAGGGGATTTTTTCGGAATAAAGAATTTTGGCGTCA
ATTTAACAAGATTAGCTCCTGGAGCACAATCTGCGTTGCTACATAAACATAAATTACAGGAAGAGTTGGTTTTTATCCTC
AAAGGGCAGCCAACATTAGTCACTGAAACTGCTGACATTCAATTACATCCCGGAATGTGTGCTGGATTTACTCCAGATGG
CACAGCACATCAATTGGTCAATCGGACAGCTGATGAAGTGGTTTATCTTGAAATAGGAGATCGAACCCAGGGCGATGAAG
TAAACTATCCTGCCGATGATCTGGCAGCAGCCTTTGGTAATGATGGGCAGTGGCATTTTATGCATAAAAATGGAATGCCG
TATTAA

Upstream 100 bases:

>100_bases
GCAGATAAATTCTCCGCAAAAAAGAACAAGATATTTAAGAGCACTTACTTTATGCTAATATTGATTCAATATTGCAATAA
CAAAACTCCAATCGACGATC

Downstream 100 bases:

>100_bases
TAAGAAATAATTAGAAAGAAAAAATTATGATAACTAACAACATCAGATTCAATTCGATTATCTTCAGCCTGTTATTTGGT
TTATTAAGTTTACTCAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: Cupin 2 Conserved Barrel Domain Protein; Cupin Domain Protein; Cupin Domain-Containing Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin 2 Protein; Transcriptional Regulator Protein; Sugar Oxidoreductase

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MMNTDSHPLLAIAAEEVPPRTKPSIYPEPFASMMAGRQKHALGDFFGIKNFGVNLTRLAPGAQSALLHKHKLQEELVFIL
KGQPTLVTETADIQLHPGMCAGFTPDGTAHQLVNRTADEVVYLEIGDRTQGDEVNYPADDLAAAFGNDGQWHFMHKNGMP
Y

Sequences:

>Translated_161_residues
MMNTDSHPLLAIAAEEVPPRTKPSIYPEPFASMMAGRQKHALGDFFGIKNFGVNLTRLAPGAQSALLHKHKLQEELVFIL
KGQPTLVTETADIQLHPGMCAGFTPDGTAHQLVNRTADEVVYLEIGDRTQGDEVNYPADDLAAAFGNDGQWHFMHKNGMP
Y
>Mature_161_residues
MMNTDSHPLLAIAAEEVPPRTKPSIYPEPFASMMAGRQKHALGDFFGIKNFGVNLTRLAPGAQSALLHKHKLQEELVFIL
KGQPTLVTETADIQLHPGMCAGFTPDGTAHQLVNRTADEVVYLEIGDRTQGDEVNYPADDLAAAFGNDGQWHFMHKNGMP
Y

Specific function: Unknown

COG id: COG3837

COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17669; Mature: 17669

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNTDSHPLLAIAAEEVPPRTKPSIYPEPFASMMAGRQKHALGDFFGIKNFGVNLTRLAP
CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCHHCCCCEEEEECC
GAQSALLHKHKLQEELVFILKGQPTLVTETADIQLHPGMCAGFTPDGTAHQLVNRTADEV
CHHHHHHHHHHHHHHEEEEECCCCEEEEECCCEEECCCEECCCCCCCHHHHHHHCCCCEE
VYLEIGDRTQGDEVNYPADDLAAAFGNDGQWHFMHKNGMPY
EEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCC
>Mature Secondary Structure
MMNTDSHPLLAIAAEEVPPRTKPSIYPEPFASMMAGRQKHALGDFFGIKNFGVNLTRLAP
CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCHHCCCCEEEEECC
GAQSALLHKHKLQEELVFILKGQPTLVTETADIQLHPGMCAGFTPDGTAHQLVNRTADEV
CHHHHHHHHHHHHHHEEEEECCCCEEEEECCCEEECCCEECCCCCCCHHHHHHHCCCCEE
VYLEIGDRTQGDEVNYPADDLAAAFGNDGQWHFMHKNGMPY
EEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA