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The map label for this gene is sodC [H]

Identifier: 54295190

GI number: 54295190

Start: 2589191

End: 2589679

Strand: Direct

Name: sodC [H]

Synonym: lpl2270

Alternate gene names: 54295190

Gene position: 2589191-2589679 (Clockwise)

Preceding gene: 54295185

Following gene: 54295193

Centisome position: 77.39

GC content: 40.9

Gene sequence:

>489_bases
ATGAATAAATCAGGAATAATATTAATTGGTACTATTTTATTCTCAAGCATGGCTATTGCCGATGATCTTACAGCACCAAT
TTACACGACTGGTACCAAACCAGTTGCAATAGGCAAGGTAACCTTCACACAAACTCCTTATGGTGTTTTGATTACACCAG
ATTTAACTAACCTTCCTGAAGGTCCGCATGGTTTCCATTTACATAAAAATGCGGATTGTGGTAACCACGGAATGCATGCA
GAAGGACATTATGATCCTCAAAATACCAATAGCCACCAAGGCCCTTATGGTAATGGGCACTTGGGAGATTTACCTGTTTT
ATATGTCACAAGTAATGGGAAAGCAATGATACCTACTTTAGCTCCTCGTTTGAAATTAAGTGATATGCACAATTTAGCTG
TCATGATCCATGCCAATGGAGACACTTACAGTGACAATCCTCCACAAGGTGGCGGGGGGGACCGTATAGCTTGCGGCGTC
ATTAAATAG

Upstream 100 bases:

>100_bases
ACCCAAAAAAATCGAATTTTTTTTAAATCCTGTGGAATAAATGTTTTTCTTGGATAATACTAAAAATATTAATGGGCTTT
GAAAAACACCGGGAAATGAC

Downstream 100 bases:

>100_bases
TTTTTTGCATTTGAAGCAGATAATCTGCTTCAAATGCAATGATTTATTTGATTCGACCACTCACATGAACCGCATGAATC
ACAGCAGTAATACGTCCAAC

Product: superoxide dismutase [Cu-Zn] precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MNKSGIILIGTILFSSMAIADDLTAPIYTTGTKPVAIGKVTFTQTPYGVLITPDLTNLPEGPHGFHLHKNADCGNHGMHA
EGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTLAPRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGV
IK

Sequences:

>Translated_162_residues
MNKSGIILIGTILFSSMAIADDLTAPIYTTGTKPVAIGKVTFTQTPYGVLITPDLTNLPEGPHGFHLHKNADCGNHGMHA
EGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTLAPRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGV
IK
>Mature_162_residues
MNKSGIILIGTILFSSMAIADDLTAPIYTTGTKPVAIGKVTFTQTPYGVLITPDLTNLPEGPHGFHLHKNADCGNHGMHA
EGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTLAPRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGV
IK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=166, Percent_Identity=43.9759036144578, Blast_Score=133, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI17554806, Length=173, Percent_Identity=29.4797687861272, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17094; Mature: 17094

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSGIILIGTILFSSMAIADDLTAPIYTTGTKPVAIGKVTFTQTPYGVLITPDLTNLPE
CCCCCEEEEHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCC
GPHGFHLHKNADCGNHGMHAEGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTL
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCC
APRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGVIK
CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNKSGIILIGTILFSSMAIADDLTAPIYTTGTKPVAIGKVTFTQTPYGVLITPDLTNLPE
CCCCCEEEEHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCC
GPHGFHLHKNADCGNHGMHAEGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTL
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCC
APRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGVIK
CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9086394 [H]