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The map label for this gene is lidB

Identifier: 54295115

GI number: 54295115

Start: 2508517

End: 2511093

Strand: Direct

Name: lidB

Synonym: lpl2195

Alternate gene names: NA

Gene position: 2508517-2511093 (Clockwise)

Preceding gene: 54295114

Following gene: 54295116

Centisome position: 74.98

GC content: 38.26

Gene sequence:

>2577_bases
ATGCATTGGCAAAAAATAAATCAGAAGGACCTGCCCATAAAGTTCACCGATGAACTTAAATCAGATGAGCTTTATAATCT
ATTGTCTCAAGGAGCAGTCGTTATTACTCCTAACAATAGATTAAGCGGAACCATCCTTCAGAATTACTTCACTTATTGTT
CCAGAAAAACAATTACCAAGCCAATATGCTTGCCTTTTAATACATTTCTAGTTAACTCTTTTGAACAACTCAAATTCCAA
AAACCAGACCTGGAACATCCCATACTTTTAAACTCGGCACAATGCCAACATTTATGGCGAAAACTAATTAAATCTCATCC
TTCTATCATTTACACGGAAGGCTTGCTTAAAACAATAATGCAAGCATGGGAATACTGTGAGCAATGGCAACTTACACCTG
AAGCGCCTGCTTTTCACTACACGCCGCAAACACAACAATTTCAACAATGGTGGCAATCTTTTAATAAAATACTTAAAGAA
ATTTCTGCCATCCATCAGCATCAATTAATTCCCTACTTGCTTGATTCCAATTATCAAGGGCTTGTAAAAACCGTTGTCTG
GATGTGCTTTGATGACTTTAATCCACAACAATTATCCCTGCAAAATTATTTGAACGCGCAGGGGGTAATTCAATATGGTT
ATGATTTAGAAGAAAACCAGGAGACTCCGGAGGTTTTCTCAGCTAAAGACAAAAAAACAGAATACCAGGAATTGATGACT
TGGTTGGAGAAGAAAATTCAACAAGGAAAAAAGCAAATCGGGGTTGTTGTGCCTAATCTTGAACAAGAATCATCGGTTTT
GCAACGAATTTTACGCGACTGCTTTGAACCCAATTTATTTAATATTTCTTTAGGCAAACCACTAAGCGCATTTCACTTGA
TCTCTCATGCACTCATATGGCTGAGCCTTGATCACAATCTCTTAAATAATCATCAAGCAGCTTTGCTGCTCCAATCACCC
TACCTTGGCAAGGCAAAAGATGAGTTTCTTCAAAGATCAGATTACTTACAAGAAAGCAAGTTGTTGCAAGACCAATCTTT
TCCCACAAAATTATTTATTGAGGACATTGCCTACCACACGCCTAAACTGGCTGAATTGTTAAAAAACATGAATTTTTATC
CGGAAAAAACTACCCTGGATGAGTGGATTGAGTTATTTCAGGAGAGGTTAAATGGCATTGGTTTTCCTGGAGATTATGTT
TTGAACTCAGAGGATTATCAATGCTTTAATCGCTTTACAATGATTTTTGACGAATTCAGACAATTAAGTCTCATAAGCAG
CTATTTGACCAAAAAAGAGGCATTTGAAGCGTTAAAACAACTCATAGACAACACTATTTTTCAACCACAAAAAAGCAATT
CACCAATTCAAATTTTGGGATTGTTAGAGGCATCAGGTTGCGAGTTTGACAGCCTTTGGGTAATGGGATTGAGTGATCGA
TGTTTACCTCAACAAACACGTTTATCGCCCTTTATCCCATTTGAATTACAGCGTGAACTGGGCATGCCTCACAGTATACC
GGCAAGAGAGCTCCAATATGCCAAGCAAATTTTGCAAAGACTGCAACGAGGCAGTGTGGAAACCGTTTTTAGTTATCCAC
AATTTGAAGATGACACGCCTAATTTACCCTGCTCATTGATTACTCATTATCCTGCCTACCTCAGCCGGCCTGCTGACAAT
AAAACAAATGTCCAAAGTTGTTTGGTTCCTCTTGAAGAAAACTATGAAGTGCCTGTAAAACCTGATGAATCCATTTCTGG
CGGAACCAGCTTACTAAGCAATCAGGCCAAATGCCCTTTTAAAGCATTAGCACAACACCGACTTAAGGCAAACCCTGTTC
TAAAAACTACAGATGGAATGGATGACAAGGAAAAAGGTCAATTAATCCATAAGATACTGGAGTTACTCTGGCAAAGATTG
GAAAATCAGGAACAATTAATTAAATTAAAACCCGCTGAACTTGAACAATTCATTGATCAAGCAATTCAAGACGCTTTAAA
TCCGATTAGGCAACGACACTCCCAGGCTTTTCCTGACTTGGTTGCCAATGTTGAATATATGAGATTAAAACGAATTATCT
TGTCTTATCTGGAATGGGAAAAGCAACGCCCTCCTTTTAAAATCACAGGCCTGGAAGAAAATCATTCGATCAATTTGGCT
GGGCTCGATTTTAAAGTAAGAGTGGACAGACTGGATGAAGTAGGTAACAAACAATGGGTCATTGATTATAAAAGCACTCT
CCCTGGCGGCAAACCATGGAATGAAGAAAGACCAATGGAACCTCAATTGCTACTTTATGCGTTGCTTAACGAACAAATCA
ATACTTTGTTATTGATTCAATTAAAAACCGGAAAAATCAAGCTCAGCGGTTTTAGCGAAGAAAAATGGGAAACCAAAGAG
ATTAATACTTTGAAAGAGGATGAAAATTGGGAAGACTATCGACAACGCTGGCTAGAACAATTAACTCATTTAGCTGAAGA
AATTAAGTCTGGCTATTGTCCGCCACGCCCTCAAAATCTGACCATTTGCCAACGCTGTGATTTTAAGAACTTATGCCGCT
TCCAGGCTAAACAATAA

Upstream 100 bases:

>100_bases
TTGCTGGCTGTTGCATCCGGACTAGCTGCTATGTATTTAAGAGGGCAATTAGTATACGATATCCTGCATACCCAAACCCG
ACGTCAACAAAAACAGAAGC

Downstream 100 bases:

>100_bases
ACCAGTTTTAATTTATCGGGACTACTTATGCATCATTTAATTCTTGGTTATGGCTATTGCGGTTATTACCTGGCCCAAGA
GCTTCTTGGGCATCATCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: DNA Repair Protein; Inactivated Superfamily I Helicase; ATP-Dependent Nuclease Subunit B

Number of amino acids: Translated: 858; Mature: 858

Protein sequence:

>858_residues
MHWQKINQKDLPIKFTDELKSDELYNLLSQGAVVITPNNRLSGTILQNYFTYCSRKTITKPICLPFNTFLVNSFEQLKFQ
KPDLEHPILLNSAQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKILKE
ISAIHQHQLIPYLLDSNYQGLVKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLEENQETPEVFSAKDKKTEYQELMT
WLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSP
YLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYV
LNSEDYQCFNRFTMIFDEFRQLSLISSYLTKKEAFEALKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLSDR
CLPQQTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTPNLPCSLITHYPAYLSRPADN
KTNVQSCLVPLEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRL
ENQEQLIKLKPAELEQFIDQAIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLA
GLDFKVRVDRLDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSGFSEEKWETKE
INTLKEDENWEDYRQRWLEQLTHLAEEIKSGYCPPRPQNLTICQRCDFKNLCRFQAKQ

Sequences:

>Translated_858_residues
MHWQKINQKDLPIKFTDELKSDELYNLLSQGAVVITPNNRLSGTILQNYFTYCSRKTITKPICLPFNTFLVNSFEQLKFQ
KPDLEHPILLNSAQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKILKE
ISAIHQHQLIPYLLDSNYQGLVKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLEENQETPEVFSAKDKKTEYQELMT
WLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSP
YLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYV
LNSEDYQCFNRFTMIFDEFRQLSLISSYLTKKEAFEALKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLSDR
CLPQQTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTPNLPCSLITHYPAYLSRPADN
KTNVQSCLVPLEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRL
ENQEQLIKLKPAELEQFIDQAIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLA
GLDFKVRVDRLDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSGFSEEKWETKE
INTLKEDENWEDYRQRWLEQLTHLAEEIKSGYCPPRPQNLTICQRCDFKNLCRFQAKQ
>Mature_858_residues
MHWQKINQKDLPIKFTDELKSDELYNLLSQGAVVITPNNRLSGTILQNYFTYCSRKTITKPICLPFNTFLVNSFEQLKFQ
KPDLEHPILLNSAQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKILKE
ISAIHQHQLIPYLLDSNYQGLVKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLEENQETPEVFSAKDKKTEYQELMT
WLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSP
YLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYV
LNSEDYQCFNRFTMIFDEFRQLSLISSYLTKKEAFEALKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLSDR
CLPQQTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTPNLPCSLITHYPAYLSRPADN
KTNVQSCLVPLEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRL
ENQEQLIKLKPAELEQFIDQAIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLA
GLDFKVRVDRLDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSGFSEEKWETKE
INTLKEDENWEDYRQRWLEQLTHLAEEIKSGYCPPRPQNLTICQRCDFKNLCRFQAKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 100260; Mature: 100260

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHWQKINQKDLPIKFTDELKSDELYNLLSQGAVVITPNNRLSGTILQNYFTYCSRKTITK
CCCCCCCCCCCCEEECCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
PICLPFNTFLVNSFEQLKFQKPDLEHPILLNSAQCQHLWRKLIKSHPSIIYTEGLLKTIM
CCCCCHHHHHHCCHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHH
QAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKILKEISAIHQHQLIPYLLDSNYQG
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHH
LVKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLEENQETPEVFSAKDKKTEYQELMT
HHHHHHHHHHCCCCCHHCCHHHHCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHH
WLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIW
HHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
LSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHT
HEECHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFR
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
QLSLISSYLTKKEAFEALKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLSDR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCC
CLPQQTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTP
CCCCHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
NLPCSLITHYPAYLSRPADNKTNVQSCLVPLEENYEVPVKPDESISGGTSLLSNQAKCPF
CCCHHHHHHCHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCH
KALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEQLIKLKPAELEQFIDQ
HHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
AIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEE
GLDFKVRVDRLDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQ
CCEEEEEHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
LKTGKIKLSGFSEEKWETKEINTLKEDENWEDYRQRWLEQLTHLAEEIKSGYCPPRPQNL
EECCEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TICQRCDFKNLCRFQAKQ
HHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MHWQKINQKDLPIKFTDELKSDELYNLLSQGAVVITPNNRLSGTILQNYFTYCSRKTITK
CCCCCCCCCCCCEEECCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
PICLPFNTFLVNSFEQLKFQKPDLEHPILLNSAQCQHLWRKLIKSHPSIIYTEGLLKTIM
CCCCCHHHHHHCCHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHH
QAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKILKEISAIHQHQLIPYLLDSNYQG
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHH
LVKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLEENQETPEVFSAKDKKTEYQELMT
HHHHHHHHHHCCCCCHHCCHHHHCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHH
WLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIW
HHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
LSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHT
HEECHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFR
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
QLSLISSYLTKKEAFEALKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLSDR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCC
CLPQQTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTP
CCCCHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
NLPCSLITHYPAYLSRPADNKTNVQSCLVPLEENYEVPVKPDESISGGTSLLSNQAKCPF
CCCHHHHHHCHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCH
KALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEQLIKLKPAELEQFIDQ
HHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
AIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEE
GLDFKVRVDRLDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQ
CCEEEEEHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
LKTGKIKLSGFSEEKWETKEINTLKEDENWEDYRQRWLEQLTHLAEEIKSGYCPPRPQNL
EECCEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TICQRCDFKNLCRFQAKQ
HHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA