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The map label for this gene is ycfD [H]

Identifier: 54294788

GI number: 54294788

Start: 2087237

End: 2088424

Strand: Direct

Name: ycfD [H]

Synonym: lpl1865

Alternate gene names: 54294788

Gene position: 2087237-2088424 (Clockwise)

Preceding gene: 54294787

Following gene: 54294789

Centisome position: 62.39

GC content: 38.8

Gene sequence:

>1188_bases
ATGGTTCACTTTCAAAAAATGACTGTCCAAACCTTTTTAAAAGACTATTGGCAAAAAAAACCATTGATCATTCGTCAGGC
TTTACCTGATTTTACTAATCCACTCACACCGGATGAGTTGGCAGGACTTGCTCTTGAGGAAGAAATAGAAAGCCGCCTGG
TCTATGAAACGCCCGATCAATCCCCGCAGTGGAATTTAAAAAGAGGCCCGTTTAAGGAATCTGATTTGATAGGCTTACCT
AAAACTCACTGGACCCTATTAGTACAAGGAGTAGACCGCATTGTTCCAGATGTCTATGAGTTACTTGATCATTTCAATTT
TATCCCTCAATGGCGAGTTGATGACGTGATGATTAGTTATGCCACTCTACATGGAAGTGTGGGTCCACATTACGATAATT
ATGATGTTTTTTTGTATCAGGCTAAAGGTCAACGACTATGGTCATTAACCTCCAAAAAGTGTCACACCAACAATTTTATA
AAAGGTCTTGAACTACGAATCATGAATGAATTTGAGGTAGAAGAGCAATTTATCCTGGAAGAAGGCGACATGCTCTATTT
ACCCCCCCATATAGGACATTATGGAATCGCTCAATCTGAAGAATGTATGACTTACTCTTTTGGTTATAGAAGTTACCAGG
GACAAGAGTTATGGGATAGTCTGGGTGATTATTTGTCTGAACATGGCTTGTTCAAATCCCTCTATCAGGATCCAGATTGG
TCCACTCTTAAAAACACATCAGAAATAACGCCCAAAGCTTGGAGCAATGCAAGGCAATTGCTAAGACAAGTCCTGGAAAA
TGATCAGCTCATGCACTCCTGGTTCGGTTGTTTTGCTACAAGCCTTGATCAATCAGCAGAACAATATTTACCCCCTCCTT
TAGAAGAAGATGAATTACTCGGTTTGGACGAATTTATTAAAGAATTGTCTAATTATCAGGAAATAGTTAGAGATGCCTCA
TGTCGTTTTGCTTATATCATGTCTGACCAAGAATCCCAGTGCCATTTTTATGTCAATGGGAAAGAATGGGACAGTCGCGG
GGTTTCAACAAACTTACTCAGTTTTGTTGCCAATAATCGATTCCTGCCACTAAAAGAGTTAAAACCTTATTTAAACCATA
AGACTAATCAACTCTTCCTCTATGAATTATGGAAATTACAATGGTTACAAATTTCTCATGATCAATGA

Upstream 100 bases:

>100_bases
AAAACAGGTAAAAATCTAAATTTGACGGGATTTATCGGTTGCATTCTTGAGTCTCAAAGTGCTTAAATAGATAACATTTA
TCAAACTATGATTTTTAATA

Downstream 100 bases:

>100_bases
TTTGGTTTATAAATATCTTGAATAAAATTCACTATCAATAGGTAGACAAAATAAAATTTTCTAATTAGTTTATTAGATCA
TTATTATATGGATATGTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MVHFQKMTVQTFLKDYWQKKPLIIRQALPDFTNPLTPDELAGLALEEEIESRLVYETPDQSPQWNLKRGPFKESDLIGLP
KTHWTLLVQGVDRIVPDVYELLDHFNFIPQWRVDDVMISYATLHGSVGPHYDNYDVFLYQAKGQRLWSLTSKKCHTNNFI
KGLELRIMNEFEVEEQFILEEGDMLYLPPHIGHYGIAQSEECMTYSFGYRSYQGQELWDSLGDYLSEHGLFKSLYQDPDW
STLKNTSEITPKAWSNARQLLRQVLENDQLMHSWFGCFATSLDQSAEQYLPPPLEEDELLGLDEFIKELSNYQEIVRDAS
CRFAYIMSDQESQCHFYVNGKEWDSRGVSTNLLSFVANNRFLPLKELKPYLNHKTNQLFLYELWKLQWLQISHDQ

Sequences:

>Translated_395_residues
MVHFQKMTVQTFLKDYWQKKPLIIRQALPDFTNPLTPDELAGLALEEEIESRLVYETPDQSPQWNLKRGPFKESDLIGLP
KTHWTLLVQGVDRIVPDVYELLDHFNFIPQWRVDDVMISYATLHGSVGPHYDNYDVFLYQAKGQRLWSLTSKKCHTNNFI
KGLELRIMNEFEVEEQFILEEGDMLYLPPHIGHYGIAQSEECMTYSFGYRSYQGQELWDSLGDYLSEHGLFKSLYQDPDW
STLKNTSEITPKAWSNARQLLRQVLENDQLMHSWFGCFATSLDQSAEQYLPPPLEEDELLGLDEFIKELSNYQEIVRDAS
CRFAYIMSDQESQCHFYVNGKEWDSRGVSTNLLSFVANNRFLPLKELKPYLNHKTNQLFLYELWKLQWLQISHDQ
>Mature_395_residues
MVHFQKMTVQTFLKDYWQKKPLIIRQALPDFTNPLTPDELAGLALEEEIESRLVYETPDQSPQWNLKRGPFKESDLIGLP
KTHWTLLVQGVDRIVPDVYELLDHFNFIPQWRVDDVMISYATLHGSVGPHYDNYDVFLYQAKGQRLWSLTSKKCHTNNFI
KGLELRIMNEFEVEEQFILEEGDMLYLPPHIGHYGIAQSEECMTYSFGYRSYQGQELWDSLGDYLSEHGLFKSLYQDPDW
STLKNTSEITPKAWSNARQLLRQVLENDQLMHSWFGCFATSLDQSAEQYLPPPLEEDELLGLDEFIKELSNYQEIVRDAS
CRFAYIMSDQESQCHFYVNGKEWDSRGVSTNLLSFVANNRFLPLKELKPYLNHKTNQLFLYELWKLQWLQISHDQ

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=335, Percent_Identity=33.4328358208955, Blast_Score=191, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 46480; Mature: 46480

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHFQKMTVQTFLKDYWQKKPLIIRQALPDFTNPLTPDELAGLALEEEIESRLVYETPDQ
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCEEEECCCC
SPQWNLKRGPFKESDLIGLPKTHWTLLVQGVDRIVPDVYELLDHFNFIPQWRVDDVMISY
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
ATLHGSVGPHYDNYDVFLYQAKGQRLWSLTSKKCHTNNFIKGLELRIMNEFEVEEQFILE
HHHCCCCCCCCCCCEEEEEECCCCEEEHHHCCCCCCCHHHCCEEEEEECHHHHHHHHHHC
EGDMLYLPPHIGHYGIAQSEECMTYSFGYRSYQGQELWDSLGDYLSEHGLFKSLYQDPDW
CCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
STLKNTSEITPKAWSNARQLLRQVLENDQLMHSWFGCFATSLDQSAEQYLPPPLEEDELL
HHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GLDEFIKELSNYQEIVRDASCRFAYIMSDQESQCHFYVNGKEWDSRGVSTNLLSFVANNR
CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
FLPLKELKPYLNHKTNQLFLYELWKLQWLQISHDQ
CCCHHHHHHHHCCCCCEEEEEEHHHHEEEEECCCC
>Mature Secondary Structure
MVHFQKMTVQTFLKDYWQKKPLIIRQALPDFTNPLTPDELAGLALEEEIESRLVYETPDQ
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCEEEECCCC
SPQWNLKRGPFKESDLIGLPKTHWTLLVQGVDRIVPDVYELLDHFNFIPQWRVDDVMISY
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
ATLHGSVGPHYDNYDVFLYQAKGQRLWSLTSKKCHTNNFIKGLELRIMNEFEVEEQFILE
HHHCCCCCCCCCCCEEEEEECCCCEEEHHHCCCCCCCHHHCCEEEEEECHHHHHHHHHHC
EGDMLYLPPHIGHYGIAQSEECMTYSFGYRSYQGQELWDSLGDYLSEHGLFKSLYQDPDW
CCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
STLKNTSEITPKAWSNARQLLRQVLENDQLMHSWFGCFATSLDQSAEQYLPPPLEEDELL
HHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GLDEFIKELSNYQEIVRDASCRFAYIMSDQESQCHFYVNGKEWDSRGVSTNLLSFVANNR
CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
FLPLKELKPYLNHKTNQLFLYELWKLQWLQISHDQ
CCCHHHHHHHHCCCCCEEEEEEHHHHEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]