Click here to switch to the map view.

The map label for this gene is 54294592

Identifier: 54294592

GI number: 54294592

Start: 1862865

End: 1863590

Strand: Direct

Name: 54294592

Synonym: lpl1668

Alternate gene names: NA

Gene position: 1862865-1863590 (Clockwise)

Preceding gene: 54294591

Following gene: 54294598

Centisome position: 55.68

GC content: 35.54

Gene sequence:

>726_bases
ATGTGGAAAACAAAATTCGGCAAATGTATTTATATTTCACCGTCAGGATATAAAGTCTATCAAAATTTGTTGTACCGTTG
GCTTACTTTAGGTAGCGAAGCATGGCAAACTGTAATTAACCGTTATATACCTCGCAGGCCTGGTTTACATTATCTGCAAA
TGCTGACACTTATGGCGCGAAAATATCCTAATGATTGTTGTTTATTAGGACTTGGAGGAGCAGGAATCGCTCACCTACTG
GGTGCACAAAAAACCATACGCTCTATCGTTGCCGTGGAAAGTAGTGAAGAAGTGATTCAAATTGCCCAAAAATTTTTTAT
GACAGATTTAATTCCTCATTTCACCATTACCCACCAAAACGCCCGAGATTTTGTACGTGAAAACAAAAAGACTTTTCAGC
ACATGCTTCTTGATCTATATGACGCAACTCATTTTCCCGATGAGTGCCATTCTATGGATTTCTTCATTCATTGTAAAAAG
CAACTAACTAACGATGGATTTTTAGCTGTTAACTTAGCAAACTCCCAAGAACAATGGGCTCTGGTCCAATTAATCAAGAG
ACAATTTCCATCCAATATCATTATTCCAATAAAAAAATGTGCCAATATTGTTGTCATTGCATCCAAAAATGACAACAAAG
ACTTGTTTATTAAACAAGTCAGGAATACTAATGAAATAAAAAAAATTACATGGGTAAAAGATTGGGATTATGTTGCTGAA
TATTAA

Upstream 100 bases:

>100_bases
ATCCGCAACTATTATATGAATGTCTGGATGCATTGGATGAATTAACCCAGATCTTGAAATTAGGCTCAATATATCCCTTT
CAATCTTGAGTATCCGAGTC

Downstream 100 bases:

>100_bases
TTGAAAGGAAACAATAGGTTATTTACAAATGAAACTCAGCCAAAAGCTGGTATGTATTTAAATATTTTATCTTATTTTCG
CATGTAATTAATCGCTGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQMLTLMARKYPNDCCLLGLGGAGIAHLL
GAQKTIRSIVAVESSEEVIQIAQKFFMTDLIPHFTITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFIHCKK
QLTNDGFLAVNLANSQEQWALVQLIKRQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDWDYVAE
Y

Sequences:

>Translated_241_residues
MWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQMLTLMARKYPNDCCLLGLGGAGIAHLL
GAQKTIRSIVAVESSEEVIQIAQKFFMTDLIPHFTITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFIHCKK
QLTNDGFLAVNLANSQEQWALVQLIKRQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDWDYVAE
Y
>Mature_241_residues
MWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQMLTLMARKYPNDCCLLGLGGAGIAHLL
GAQKTIRSIVAVESSEEVIQIAQKFFMTDLIPHFTITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFIHCKK
QLTNDGFLAVNLANSQEQWALVQLIKRQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDWDYVAE
Y

Specific function: Unknown

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28076; Mature: 28076

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQMLTLMAR
CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KYPNDCCLLGLGGAGIAHLLGAQKTIRSIVAVESSEEVIQIAQKFFMTDLIPHFTITHQN
HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEECCC
ARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFIHCKKQLTNDGFLAVNLANSQEQWA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHEEEEHHHCCCCCEEEEEECCCCHHHH
LVQLIKRQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDWDYVAE
HHHHHHHHCCCCEEEEEHHHCCEEEEEECCCCCHHHHHHHCCCCCHHEEEEEECCHHHHC
Y
C
>Mature Secondary Structure
MWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQMLTLMAR
CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KYPNDCCLLGLGGAGIAHLLGAQKTIRSIVAVESSEEVIQIAQKFFMTDLIPHFTITHQN
HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEECCC
ARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFIHCKKQLTNDGFLAVNLANSQEQWA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHEEEEHHHCCCCCEEEEEECCCCHHHH
LVQLIKRQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDWDYVAE
HHHHHHHHCCCCEEEEEHHHCCEEEEEECCCCCHHHHHHHCCCCCHHEEEEEECCHHHHC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA