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The map label for this gene is deoC [H]

Identifier: 54294532

GI number: 54294532

Start: 1781765

End: 1782529

Strand: Direct

Name: deoC [H]

Synonym: lpl1608

Alternate gene names: 54294532

Gene position: 1781765-1782529 (Clockwise)

Preceding gene: 54294531

Following gene: 54294533

Centisome position: 53.26

GC content: 37.78

Gene sequence:

>765_bases
GTGAGTTTGGATAAGCATTTTAATGATGTCTTGAACAAGCTCCTGTCAAATCAGGATATTATATCTATTTCGAATGCTCA
GTTGATGCATTGCATTGATTTGACACTACTAGAGGCGGATGCTTCTCTTGAAGCATTGCATCAATTACAGAGCCAAGCCT
GTCAAAATAATGTTGCAGCTATTTGCGTACTACCCAAACATCTTCATGTATTTAAGCCTAACTCCAAAATTAAATTAGCA
ACTGTTATCAATTTTCCTCTTGGGAATGATGATTTGCTGGTTTCCTTGGAAGAGATAGATAATGCCATTCAACTGGGTGC
TAATGAAATAGATTATGTACTACCCTATCAGTATTACTTAAGAGGAAATAAGCAAAAAGCGTTAAATCATTGTGATGTCA
TTATTCAAACCTGCAAGAAACATCAACTTACCTTAAAAATAATTTTAGAAACTGGCCTTTTTCCAGATATGGAAAGCGTT
TATCAGCTTAGCTCAGAAATCATTGCTCTTGGTGGGCGGTTTCTCAAAACTTCGACTGGAAAAACCCCTCAGGGTGCAAC
TCTGGCAGCAATATTTGCTATAGTCAGTGCTGTTATGGATTCAACTTATACATCCTCTTGTGGAATAAAGGTTTCAGGAG
GGATTAAAACGCCTCTTCAGGCTCAACAATATGCTCAACTGGCTGAATTACTTATGGGCAAAGCCATTCATAGGGATTGG
TTTCGTATTGGAGCCAGTACTCTGCTTGAGAAATTATTGTCATGA

Upstream 100 bases:

>100_bases
TTGCAAAAACCAGTCATAGCCATGAATCCGTTGTCAAAATGGCTTCCAGTGCTGCTGAAAAACTTAATACTTTGATTAAA
CAGTATATTTTGGAATTATC

Downstream 100 bases:

>100_bases
ACGCACAATCTATGTGTTAATATGTCAGCATGTAAACGGGAGAGGTCTTGCAATGAAATTATGGATAATGCTATTTAACT
GCTTTATTGTTACCTTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSLDKHFNDVLNKLLSNQDIISISNAQLMHCIDLTLLEADASLEALHQLQSQACQNNVAAICVLPKHLHVFKPNSKIKLA
TVINFPLGNDDLLVSLEEIDNAIQLGANEIDYVLPYQYYLRGNKQKALNHCDVIIQTCKKHQLTLKIILETGLFPDMESV
YQLSSEIIALGGRFLKTSTGKTPQGATLAAIFAIVSAVMDSTYTSSCGIKVSGGIKTPLQAQQYAQLAELLMGKAIHRDW
FRIGASTLLEKLLS

Sequences:

>Translated_254_residues
MSLDKHFNDVLNKLLSNQDIISISNAQLMHCIDLTLLEADASLEALHQLQSQACQNNVAAICVLPKHLHVFKPNSKIKLA
TVINFPLGNDDLLVSLEEIDNAIQLGANEIDYVLPYQYYLRGNKQKALNHCDVIIQTCKKHQLTLKIILETGLFPDMESV
YQLSSEIIALGGRFLKTSTGKTPQGATLAAIFAIVSAVMDSTYTSSCGIKVSGGIKTPLQAQQYAQLAELLMGKAIHRDW
FRIGASTLLEKLLS
>Mature_253_residues
SLDKHFNDVLNKLLSNQDIISISNAQLMHCIDLTLLEADASLEALHQLQSQACQNNVAAICVLPKHLHVFKPNSKIKLAT
VINFPLGNDDLLVSLEEIDNAIQLGANEIDYVLPYQYYLRGNKQKALNHCDVIIQTCKKHQLTLKIILETGLFPDMESVY
QLSSEIIALGGRFLKTSTGKTPQGATLAAIFAIVSAVMDSTYTSSCGIKVSGGIKTPLQAQQYAQLAELLMGKAIHRDWF
RIGASTLLEKLLS

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=205, Percent_Identity=30.7317073170732, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1790841, Length=235, Percent_Identity=34.0425531914894, Blast_Score=124, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17533015, Length=264, Percent_Identity=31.0606060606061, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI19922098, Length=249, Percent_Identity=28.9156626506024, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27935; Mature: 27804

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDKHFNDVLNKLLSNQDIISISNAQLMHCIDLTLLEADASLEALHQLQSQACQNNVAA
CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCEE
ICVLPKHLHVFKPNSKIKLATVINFPLGNDDLLVSLEEIDNAIQLGANEIDYVLPYQYYL
EEEEECCEEEECCCCCEEEEEEEECCCCCCHHEEEHHHHHHHHHCCCCCCCEECCHHHHH
RGNKQKALNHCDVIIQTCKKHQLTLKIILETGLFPDMESVYQLSSEIIALGGRFLKTSTG
CCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHEECCCC
KTPQGATLAAIFAIVSAVMDSTYTSSCGIKVSGGIKTPLQAQQYAQLAELLMGKAIHRDW
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FRIGASTLLEKLLS
HHHHHHHHHHHHHC
>Mature Secondary Structure 
SLDKHFNDVLNKLLSNQDIISISNAQLMHCIDLTLLEADASLEALHQLQSQACQNNVAA
CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCEE
ICVLPKHLHVFKPNSKIKLATVINFPLGNDDLLVSLEEIDNAIQLGANEIDYVLPYQYYL
EEEEECCEEEECCCCCEEEEEEEECCCCCCHHEEEHHHHHHHHHCCCCCCCEECCHHHHH
RGNKQKALNHCDVIIQTCKKHQLTLKIILETGLFPDMESVYQLSSEIIALGGRFLKTSTG
CCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHEECCCC
KTPQGATLAAIFAIVSAVMDSTYTSSCGIKVSGGIKTPLQAQQYAQLAELLMGKAIHRDW
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FRIGASTLLEKLLS
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA