Click here to switch to the map view.

The map label for this gene is 54294477

Identifier: 54294477

GI number: 54294477

Start: 1721971

End: 1722807

Strand: Direct

Name: 54294477

Synonym: lpl1546

Alternate gene names: NA

Gene position: 1721971-1722807 (Clockwise)

Preceding gene: 54294475

Following gene: 54294478

Centisome position: 51.47

GC content: 39.19

Gene sequence:

>837_bases
GTGGGTAAGGTAAACGCAGTTGGAATGGCTGAAGTCGGAGTTGAAAGAGCCAAAAGGAAAGAAGCCCTAAGAGTTCTGAC
GTCATCTCCCTTCAACCTGGATAATAAGGAACACACTCAGGCATTGGAAAAGTACATCAAACAATTTGAGTTAAGTGTCA
ATCAAATGTACCTCTATCAAACAATGAGTACTGCATTAACAGCTTGGGGGGGCTCGTGGATAGTTGGAAGGTTTTTGCCT
ATTCCTGAATTTGCGAATCACCTTCTTGCAGCCTGTCTCTATTTAGGCGTTTCTGGTTACATTCTTGAATCATTTAGCAT
GACCGATTTTTATGAACAATTGAAAGAGATGAAAGTACTCTATAATTGGTGTCTAAAAAATAACAAAGAAAACTACAGTA
CCGATATCGATAATACCAATAACCTTTTGTATCCTGATATCCAGCGCATGATTAAATTAATCGCCCCTTTATGCTCTACT
GATTTTATGATTGCCTGGCCTAAAGAAGTAAAAACCGCAGAAACTCAAAGTGGAATCCTATCCAACACATTGTCTATAGG
CTATTCTATAGTATCAGCGCCATTTTCACTGTTCTCAACAGCCAGTAAACCGAGTCAGGATCAAGTGCAACGAATTAAAG
ACCTAAAAGTGCAGGTAGAAACAAGAGGCCTTGACTTAGGGGTTTTTGCTGGTTTCGAGCAGGCAGTCAAGTATTTTGCT
ACGAACTCTGATTTTAGAGATCTATTGAAAGCCAAGCTAACTCAGCCTGTCAACTCATTTAAAAATTTGTTGCAAACAAC
CATACCAGGAATGTTGGCAGGATCTAATTCAAAATAA

Upstream 100 bases:

>100_bases
TTTTTATTAAGTTAAATTAATTGAACTCTTAGCTAAAATCTAATTCATTATTTTTTAAATTTATAGTATAAAATGAAATT
TTGATTTCAAGGAGAGAATT

Downstream 100 bases:

>100_bases
TGGTAATAGATCCCTCATGCTTAAATATTACCTAACGGTCGTATTAGGTAAAGAGCTGATGTTTTTCTTGCCGACCTTAA
GCCTTATTAAAGGTTGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MGKVNAVGMAEVGVERAKRKEALRVLTSSPFNLDNKEHTQALEKYIKQFELSVNQMYLYQTMSTALTAWGGSWIVGRFLP
IPEFANHLLAACLYLGVSGYILESFSMTDFYEQLKEMKVLYNWCLKNNKENYSTDIDNTNNLLYPDIQRMIKLIAPLCST
DFMIAWPKEVKTAETQSGILSNTLSIGYSIVSAPFSLFSTASKPSQDQVQRIKDLKVQVETRGLDLGVFAGFEQAVKYFA
TNSDFRDLLKAKLTQPVNSFKNLLQTTIPGMLAGSNSK

Sequences:

>Translated_278_residues
MGKVNAVGMAEVGVERAKRKEALRVLTSSPFNLDNKEHTQALEKYIKQFELSVNQMYLYQTMSTALTAWGGSWIVGRFLP
IPEFANHLLAACLYLGVSGYILESFSMTDFYEQLKEMKVLYNWCLKNNKENYSTDIDNTNNLLYPDIQRMIKLIAPLCST
DFMIAWPKEVKTAETQSGILSNTLSIGYSIVSAPFSLFSTASKPSQDQVQRIKDLKVQVETRGLDLGVFAGFEQAVKYFA
TNSDFRDLLKAKLTQPVNSFKNLLQTTIPGMLAGSNSK
>Mature_277_residues
GKVNAVGMAEVGVERAKRKEALRVLTSSPFNLDNKEHTQALEKYIKQFELSVNQMYLYQTMSTALTAWGGSWIVGRFLPI
PEFANHLLAACLYLGVSGYILESFSMTDFYEQLKEMKVLYNWCLKNNKENYSTDIDNTNNLLYPDIQRMIKLIAPLCSTD
FMIAWPKEVKTAETQSGILSNTLSIGYSIVSAPFSLFSTASKPSQDQVQRIKDLKVQVETRGLDLGVFAGFEQAVKYFAT
NSDFRDLLKAKLTQPVNSFKNLLQTTIPGMLAGSNSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31222; Mature: 31091

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVNAVGMAEVGVERAKRKEALRVLTSSPFNLDNKEHTQALEKYIKQFELSVNQMYLYQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TMSTALTAWGGSWIVGRFLPIPEFANHLLAACLYLGVSGYILESFSMTDFYEQLKEMKVL
HHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHH
YNWCLKNNKENYSTDIDNTNNLLYPDIQRMIKLIAPLCSTDFMIAWPKEVKTAETQSGIL
HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHH
SNTLSIGYSIVSAPFSLFSTASKPSQDQVQRIKDLKVQVETRGLDLGVFAGFEQAVKYFA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHH
TNSDFRDLLKAKLTQPVNSFKNLLQTTIPGMLAGSNSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCC
>Mature Secondary Structure 
GKVNAVGMAEVGVERAKRKEALRVLTSSPFNLDNKEHTQALEKYIKQFELSVNQMYLYQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TMSTALTAWGGSWIVGRFLPIPEFANHLLAACLYLGVSGYILESFSMTDFYEQLKEMKVL
HHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHH
YNWCLKNNKENYSTDIDNTNNLLYPDIQRMIKLIAPLCSTDFMIAWPKEVKTAETQSGIL
HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHH
SNTLSIGYSIVSAPFSLFSTASKPSQDQVQRIKDLKVQVETRGLDLGVFAGFEQAVKYFA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHH
TNSDFRDLLKAKLTQPVNSFKNLLQTTIPGMLAGSNSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA