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The map label for this gene is ybgC [H]

Identifier: 54294381

GI number: 54294381

Start: 1618448

End: 1618843

Strand: Direct

Name: ybgC [H]

Synonym: lpl1450

Alternate gene names: 54294381

Gene position: 1618448-1618843 (Clockwise)

Preceding gene: 54294380

Following gene: 54294382

Centisome position: 48.37

GC content: 31.06

Gene sequence:

>396_bases
ATGAATCTTATATCAAATCATCAGCATAACATTAGAGTCTATGCAGAAGATGTTGATTATATGGGAATTGTTTATCATGC
TAACTACCTTTGTTATTTGGAAAGAGCTCGAACTGAATTATTAAGGCAAAACAATTTAATTCTAAGTGAATTCGAAAAAT
CCGATATTTTATTTGCGATTCACGAACTCACAATTAATTATGTATTCCCGGCCAGGTTAGATGATCAATTAACAATTAAA
ACAGAAATTAAAGAATTTAGAGCGTGCAGTTTTCTATTTAATCAAGAGATATCTAATCAACATAAACAATTAATTTGCAG
GGCCAGTGTTCAAGTAGTTTGCGTTGGCAGTAATCTAAAGCCCAAGCGACTACCTAATATTATGAGAAATGAATAA

Upstream 100 bases:

>100_bases
AATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCCACTTCGAAAGCTTATCAGCATTTTGGCTTTAGTG
CGATCGAACAGGAATAACAC

Downstream 100 bases:

>100_bases
CGAAACCTTTCAGTGTGGAGATTAATGGTGGCTAATCAAGCAAATGTACTAATGTATTTTATGCAAGCGGGTTTGGTAGT
AAAGTCCGTTATGTTGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MNLISNHQHNIRVYAEDVDYMGIVYHANYLCYLERARTELLRQNNLILSEFEKSDILFAIHELTINYVFPARLDDQLTIK
TEIKEFRACSFLFNQEISNQHKQLICRASVQVVCVGSNLKPKRLPNIMRNE

Sequences:

>Translated_131_residues
MNLISNHQHNIRVYAEDVDYMGIVYHANYLCYLERARTELLRQNNLILSEFEKSDILFAIHELTINYVFPARLDDQLTIK
TEIKEFRACSFLFNQEISNQHKQLICRASVQVVCVGSNLKPKRLPNIMRNE
>Mature_131_residues
MNLISNHQHNIRVYAEDVDYMGIVYHANYLCYLERARTELLRQNNLILSEFEKSDILFAIHELTINYVFPARLDDQLTIK
TEIKEFRACSFLFNQEISNQHKQLICRASVQVVCVGSNLKPKRLPNIMRNE

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=117, Percent_Identity=43.5897435897436, Blast_Score=105, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15445; Mature: 15445

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLISNHQHNIRVYAEDVDYMGIVYHANYLCYLERARTELLRQNNLILSEFEKSDILFAI
CCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEE
HELTINYVFPARLDDQLTIKTEIKEFRACSFLFNQEISNQHKQLICRASVQVVCVGSNLK
EEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCC
PKRLPNIMRNE
HHCCCCCCCCC
>Mature Secondary Structure
MNLISNHQHNIRVYAEDVDYMGIVYHANYLCYLERARTELLRQNNLILSEFEKSDILFAI
CCCCCCCCCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEE
HELTINYVFPARLDDQLTIKTEIKEFRACSFLFNQEISNQHKQLICRASVQVVCVGSNLK
EEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCC
PKRLPNIMRNE
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]