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The map label for this gene is ycfS [H]

Identifier: 54294361

GI number: 54294361

Start: 1598075

End: 1598809

Strand: Direct

Name: ycfS [H]

Synonym: lpl1430

Alternate gene names: 54294361

Gene position: 1598075-1598809 (Clockwise)

Preceding gene: 54294360

Following gene: 54294364

Centisome position: 47.77

GC content: 40.0

Gene sequence:

>735_bases
ATGGAGCAAAAATCAAAATCTATAATAAGAGTTTGGTATTTAATACTTTTACTCAGTCAATATTCTTTTGCGAATGTTTA
TGTATTGCCTGAAGCGGGAAATACCGTCGGTGAAATTCAGGTCGCATTTTCAGAGTATGGAGAAACTATAGATGAGGTTG
GCCGGCGTTTTAATGTCGGTTATTATGAAATGGTACGTGCTAACCCGGGAGTGAATGCCAGATATCCGCTAACCGCTAAC
ACAAAATTAATTATTCCATCTCGTTTTATCCTCCCCAACGTTCCCAGAAAAGGTGTAGTGATTAATTTAGCAGAATATCG
ATTATATTATTTTCCTCCAGATGACAATGTTGTCATGACTTATCCTGTTGGGATTGGTAAAAAAGGATGGGAGACTCCTT
TGGGATTAAGCAGAATCATCTCCAAGGAAATTAATCCTACCTGGAGACCTACAGTAAAATTACAAAAGGCAGCTGAAAGC
ATTGGTGCTCCTATTCCCAGTGAGTTCCCCCCTGGTCCTCACAATCCTTTAGGTCAACATGTATTGCGTTTAGGGTGGCC
AGCTATCTTAATACATGGTTCTAATCGAGTTGATGGGATTGGGGCCAAAGTCAGTGCGGGGTGTATTCGTATGCTTCCTG
ATGATATTGAGCATCTATATAGTTTAGTGTCTGTAGGGACGCCAGTAAGAATTATAAATGCTCCTCTACAAAGGCAAGCT
GATTTTAAGCAATAA

Upstream 100 bases:

>100_bases
CTAAATACGGCGAACGTTTTAAGGTAGATACCAGCTTATAATTTCTCTGCAAGGTAAGACGTTATGGTTTTGCCTTGCTT
TTTAGAGAGAAAAGCATCAT

Downstream 100 bases:

>100_bases
CTATTTTCAGGTATGGGTTTTCATTCAGATTAATGCCTATAAATCCAAATATCAGGCCTCAACTTTAATTACAGTTAACA
GATAATAAGATAATCCAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLTAN
TKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPHNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPDDIEHLYSLVSVGTPVRIINAPLQRQA
DFKQ

Sequences:

>Translated_244_residues
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLTAN
TKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPHNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPDDIEHLYSLVSVGTPVRIINAPLQRQA
DFKQ
>Mature_244_residues
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLTAN
TKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPHNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPDDIEHLYSLVSVGTPVRIINAPLQRQA
DFKQ

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=223, Percent_Identity=41.7040358744395, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787968, Length=223, Percent_Identity=41.7040358744395, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1788299, Length=233, Percent_Identity=38.1974248927039, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787040, Length=245, Percent_Identity=36.3265306122449, Blast_Score=153, Evalue=8e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27193; Mature: 27193

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHEEEHHHHHCHHHHHHHHHCCCC
YYEMVRANPGVNARYPLTANTKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMT
CEEEEECCCCCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE
YPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAESIGAPIPSEFPPGPHNPLGQH
EECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPDDIEHLYSLVSVGTPVRIINAPLQRQA
HHHHCCCEEEEECCCCCCCCCCCHHCCHHHCCHHHHHHHHHHHHCCCCEEEECCCHHCCC
DFKQ
CCCC
>Mature Secondary Structure
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHEEEHHHHHCHHHHHHHHHCCCC
YYEMVRANPGVNARYPLTANTKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMT
CEEEEECCCCCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE
YPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAESIGAPIPSEFPPGPHNPLGQH
EECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPDDIEHLYSLVSVGTPVRIINAPLQRQA
HHHHCCCEEEEECCCCCCCCCCCHHCCHHHCCHHHHHHHHHHHHCCCCEEEECCCHHCCC
DFKQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]