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The map label for this gene is nlpD [C]

Identifier: 54294182

GI number: 54294182

Start: 1389275

End: 1390018

Strand: Direct

Name: nlpD [C]

Synonym: lpl1246

Alternate gene names: 54294182

Gene position: 1389275-1390018 (Clockwise)

Preceding gene: 54294181

Following gene: 54294183

Centisome position: 41.52

GC content: 39.52

Gene sequence:

>744_bases
ATGATGCGCCTATTTCGCAAACAATTAATTTGTATTTTTTTTATCTTAAGTGTTGCTGGTTGTGGGACAAGAAGTGATTT
GGCTCCTGTTACCGAGCTAAAATGGCAGCCTTATTCAAAATATCAGAAATTCCATACGGTGCGATCAGGTGAGACCCTTT
ATGCTATAGCATTTCGTTATGATACTGATTATAGGCGGCTTGCGATCATCAATCATCTAAGGCCACCTTATTCCTTGCGA
GTAGGACAAGTTTTAAGTTTAAAAGGCATCGTGCCAAAATCCAATCACTTTCATTCAGCTCCCAGAGCTAACTTACATAT
TACCCATAAGCCAAAACAAAAAATTATTTATTCTCCAGCTTATAATGTACGTTCTTCCTCTGGCTGGCTGTGGCCAGTTA
CTGGTCGTGTTGTTACAACATTTATTCCTGCTCAGGGAAAAAAAGGCATAAATATTGCATGTAACAGAGGAGACAAAGTT
AGAGCTTCAGCGAATGGAGTTGTGGCTTATGCTGGCAGCGGTTTGCCTGGGTATGGTAATTTAATCATTATTAAACACAG
TAATGAATATTTAACTGCATACGGTAACAATGCCAGAAATCTGGTGACAGAAGGGCAGCGTGTTAGTGCGGGGCAGATAA
TAGCAGAAGCTGGTTTAATAGATAGATCATACTGGGGTGTTCATTTTGAAATTAGAAGAGCAGGGGTGCCAGTTAATCCA
TTGAATTATCTACAAAAAGGTTGA

Upstream 100 bases:

>100_bases
ACCGCTTCATTTAGACATGACTCATTATAAGCTATTTGATCATTTATCTAACTTACTTAACGAAATTTGCATAGAAAATT
AATAAATAATAAATGAGATA

Downstream 100 bases:

>100_bases
CATATAACTCATAGTTATAGCAACAATAGGCTTGTTAAGAAGTAAAAAACTATTTCAAGGCATAGCTAAACATATAGGTG
ATACAATGCAAGATGAAGAA

Product: novel lipoprotein homolog NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPAQGKKGINIACNRGDKV
RASANGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQIIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG

Sequences:

>Translated_247_residues
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPAQGKKGINIACNRGDKV
RASANGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQIIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG
>Mature_247_residues
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPAQGKKGINIACNRGDKV
RASANGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQIIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=247, Percent_Identity=36.4372469635627, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI1789099, Length=254, Percent_Identity=35.4330708661417, Blast_Score=133, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27599; Mature: 27599

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRY
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEE
DTDYRRLAIINHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPA
CCCCCEEEEEHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCC
YNVRSSSGWLWPVTGRVVTTFIPAQGKKGINIACNRGDKVRASANGVVAYAGSGLPGYGN
CCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCC
LIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQIIAEAGLIDRSYWGVHFEIRRAGVPVNP
EEEEEECCCEEEEECCCCCHHHCCCCCCCCCCEEECCCCEECCCCEEEEEEEECCCCCCH
LNYLQKG
HHHHCCC
>Mature Secondary Structure
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRY
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEE
DTDYRRLAIINHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPA
CCCCCEEEEEHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCC
YNVRSSSGWLWPVTGRVVTTFIPAQGKKGINIACNRGDKVRASANGVVAYAGSGLPGYGN
CCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCC
LIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQIIAEAGLIDRSYWGVHFEIRRAGVPVNP
EEEEEECCCEEEEECCCCCHHHCCCCCCCCCCEEECCCCEECCCCEEEEEEEECCCCCCH
LNYLQKG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]