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The map label for this gene is yagA [C]

Identifier: 54294018

GI number: 54294018

Start: 1209038

End: 1209883

Strand: Direct

Name: yagA [C]

Synonym: lpl1079

Alternate gene names: 54294018

Gene position: 1209038-1209883 (Clockwise)

Preceding gene: 54294017

Following gene: 54294020

Centisome position: 36.14

GC content: 43.03

Gene sequence:

>846_bases
ATGAAGCCATCTGTGAGACGGGAGCTGGTTGATTATGCAGTGAATACTCATACTGTGAGTTTACGCCGTGCTTGTAAGGT
TGTGGGTATCAGCGACTCGGTTTATCGATATAAGCCGGATAGCCAATCCGATGAAGGCGTTATTGTGGCATTGCAGGAAT
CATCCGAACGCTATCCGGCGTATGGCTTTAGTAAATTGCTTAAAGTCTTGCGCCGTCAGGGTCATAGGTGGAATCATAAA
CGCGTTTATCGGGTATATTGTGAACTGAAGCTCAATATGCGTCGTAAAGGCAAAAAACGGCTTCCTAATCGCTCACCTGC
CCCCCTGAGTGTGCCAGCATCCATCAATCAGTGTTGGTCTATGGATTTTATGTGTGATGCGTTGATGTGTGGCCGACGCT
TCAGAACATTTAACATAGTAGATGATTTTAACCGTGAAGTGTTGGCTATTGAAATCGATTTAAGCCTGCCTGCTCAGCGA
GTAATTCGCGTATTAGAACGTGTTGTTGCATGGCGAGGTTTCCCTGCTAAATTACGCATGGATAATGGCCCTGAATTTAT
CTCAAGCACATTAGCAGACTGGGCTGAAAAGCATCAAGTGGCTTTAGAATTTATTAAACCAGGTAAACCAACGCAAAATT
CATTTATTGAGCGATTCAATAGAACTTACCGCACGGAAATATTGGATATGTACGCGTTTAAAAATCTACAAGAAGTCAGA
GAGCTGACAGAAAACTGGATAAAGGAGTATAACGACGAGAGACCGCACGATTCGCTAAATGATTTAACACCGTGGGAATA
TCTGGCAAAAAATAAGACAATGAACTCTAATTTAGGTTGCCACTAA

Upstream 100 bases:

>100_bases
GTCTGAAAGATCTTGAAGAAGAGAACCGTCGTCTAAAGCAAATGTATGCTGAGCTAAGTCTTGATCACAAAATCCTGAAG
GATATTGTCGAAAAAAAGCT

Downstream 100 bases:

>100_bases
AGATGGGAGCTTTACATACTTGGATGAATTTATTTAATTCTTGGTCTGATACCCAATAAAGATATTTTAAATTTGTCTCA
ATTGTTAGTTCAATATTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKPSVRRELVDYAVNTHTVSLRRACKVVGISDSVYRYKPDSQSDEGVIVALQESSERYPAYGFSKLLKVLRRQGHRWNHK
RVYRVYCELKLNMRRKGKKRLPNRSPAPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQR
VIRVLERVVAWRGFPAKLRMDNGPEFISSTLADWAEKHQVALEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVR
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNKTMNSNLGCH

Sequences:

>Translated_281_residues
MKPSVRRELVDYAVNTHTVSLRRACKVVGISDSVYRYKPDSQSDEGVIVALQESSERYPAYGFSKLLKVLRRQGHRWNHK
RVYRVYCELKLNMRRKGKKRLPNRSPAPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQR
VIRVLERVVAWRGFPAKLRMDNGPEFISSTLADWAEKHQVALEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVR
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNKTMNSNLGCH
>Mature_281_residues
MKPSVRRELVDYAVNTHTVSLRRACKVVGISDSVYRYKPDSQSDEGVIVALQESSERYPAYGFSKLLKVLRRQGHRWNHK
RVYRVYCELKLNMRRKGKKRLPNRSPAPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQR
VIRVLERVVAWRGFPAKLRMDNGPEFISSTLADWAEKHQVALEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVR
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNKTMNSNLGCH

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=299, Percent_Identity=24.4147157190635, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789981, Length=228, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 33023; Mature: 33023

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSVRRELVDYAVNTHTVSLRRACKVVGISDSVYRYKPDSQSDEGVIVALQESSERYPA
CCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCC
YGFSKLLKVLRRQGHRWNHKRVYRVYCELKLNMRRKGKKRLPNRSPAPLSVPASINQCWS
CCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHH
MDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQRVIRVLERVVAWRGFPAKLRM
HHHHHHHHHHCCCCCEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEC
DNGPEFISSTLADWAEKHQVALEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNKTMNSNLGCH
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKPSVRRELVDYAVNTHTVSLRRACKVVGISDSVYRYKPDSQSDEGVIVALQESSERYPA
CCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCC
YGFSKLLKVLRRQGHRWNHKRVYRVYCELKLNMRRKGKKRLPNRSPAPLSVPASINQCWS
CCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHH
MDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQRVIRVLERVVAWRGFPAKLRM
HHHHHHHHHHCCCCCEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEC
DNGPEFISSTLADWAEKHQVALEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNKTMNSNLGCH
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]