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The map label for this gene is 54293842

Identifier: 54293842

GI number: 54293842

Start: 1008309

End: 1008860

Strand: Reverse

Name: 54293842

Synonym: lpl0898

Alternate gene names: NA

Gene position: 1008860-1008309 (Counterclockwise)

Preceding gene: 54293843

Following gene: 54293830

Centisome position: 30.15

GC content: 38.77

Gene sequence:

>552_bases
ATGCGTAAACTACCAAGACCTTTTTACGAACGTGATACCGTTCTGGTTGCAAAAGAACTTTTAGGTAAATATTTGGTTCA
TCATGATGGATTGGAAGAGAAGATTGGGCGCATTGTAGAAGTCGAAGCCTACCTTGGGCAACATGATTTGGCTTGCCATT
CATCAAAAGGATTGACTAAAAGAACTAAAGTTATGTTTGGGCCAGCAGGCTATGCGTATGTTTATCTAATTTATGGCATG
TATTATTGTATGAACGTAGTCACTGAAAAGGAGGGGGTAGGTTCAGCGGTATTAATACGTGCCCTGGAGCCTATCAAAAA
CATTCAAGACAGAACTCAAGGACCGGGGTTATTATCCAAAGCCATGCGCATTGACTCCAAACTGAATCACCGTGATTTAT
TAAGCAATGATTTTTATATTGCTGAGCCATACGGCCCAACTGATTTTACCATTATAGAAAAACCCAGAATTGGGGTTCAT
TATGCTAAAGAATGGGCTGATGCGTTATTAAGATTTTATATTAAAGACAATCCTTATATTTCGAAAACCTGA

Upstream 100 bases:

>100_bases
ACTGAATGTATCTGGGGTTGGGCAACATAAATTAGCTCGTTATGGCCATTATTTTCTCGAAGCCTTAAACGAATTTTCAG
AAGTCGAGTGAGATTCCGTT

Downstream 100 bases:

>100_bases
TTAGGCCTCGTGCATAACCTGTCTCTTTCATTTTATTGCCGCATTGCAAAGATTTCTGTGATGCTCGGGGTATGTAAAAA
GCGTATTATCGTATTAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MRKLPRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTKRTKVMFGPAGYAYVYLIYGM
YYCMNVVTEKEGVGSAVLIRALEPIKNIQDRTQGPGLLSKAMRIDSKLNHRDLLSNDFYIAEPYGPTDFTIIEKPRIGVH
YAKEWADALLRFYIKDNPYISKT

Sequences:

>Translated_183_residues
MRKLPRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTKRTKVMFGPAGYAYVYLIYGM
YYCMNVVTEKEGVGSAVLIRALEPIKNIQDRTQGPGLLSKAMRIDSKLNHRDLLSNDFYIAEPYGPTDFTIIEKPRIGVH
YAKEWADALLRFYIKDNPYISKT
>Mature_183_residues
MRKLPRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTKRTKVMFGPAGYAYVYLIYGM
YYCMNVVTEKEGVGSAVLIRALEPIKNIQDRTQGPGLLSKAMRIDSKLNHRDLLSNDFYIAEPYGPTDFTIIEKPRIGVH
YAKEWADALLRFYIKDNPYISKT

Specific function: Unknown

COG id: COG2094

COG function: function code L; 3-methyladenine DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA glycosylase MPG family [H]

Homologues:

Organism=Homo sapiens, GI62632769, Length=200, Percent_Identity=37, Blast_Score=116, Evalue=9e-27,
Organism=Homo sapiens, GI62632765, Length=200, Percent_Identity=37, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI62632771, Length=200, Percent_Identity=37, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011034
- InterPro:   IPR003180 [H]

Pfam domain/function: PF02245 Pur_DNA_glyco [H]

EC number: NA

Molecular weight: Translated: 20961; Mature: 20961

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLPRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTK
CCCCCCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHCCEEEHHHHHCCCCCCCCCCCCCCH
RTKVMFGPAGYAYVYLIYGMYYCMNVVTEKEGVGSAVLIRALEPIKNIQDRTQGPGLLSK
HHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AMRIDSKLNHRDLLSNDFYIAEPYGPTDFTIIEKPRIGVHYAKEWADALLRFYIKDNPYI
HHHHHCCCCHHHHHCCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
SKT
CCC
>Mature Secondary Structure
MRKLPRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTK
CCCCCCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHCCEEEHHHHHCCCCCCCCCCCCCCH
RTKVMFGPAGYAYVYLIYGMYYCMNVVTEKEGVGSAVLIRALEPIKNIQDRTQGPGLLSK
HHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AMRIDSKLNHRDLLSNDFYIAEPYGPTDFTIIEKPRIGVHYAKEWADALLRFYIKDNPYI
HHHHHCCCCHHHHHCCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
SKT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA