Click here to switch to the map view.

The map label for this gene is ybaV [C]

Identifier: 54293787

GI number: 54293787

Start: 959589

End: 959906

Strand: Direct

Name: ybaV [C]

Synonym: lpl0843

Alternate gene names: 54293787

Gene position: 959589-959906 (Clockwise)

Preceding gene: 54293786

Following gene: 54293788

Centisome position: 28.68

GC content: 34.91

Gene sequence:

>318_bases
ATGAAAGCAAGACTCATTGCTATTTTGTTATCAATTATTGTTATCCCTTTCTCTTCTCAAGCTGAGAACGAGCCTCAAAA
AACTCCAGCTAAACAAGTCCTTGTTAAGGGCAAGATTAATCTTAATACAGCGGATGTACATTCTTTAACAGGCTCTTTTA
AAGGGATAGGAAAAAAACGTGCTGAAGCTATTATTGCTTATAGAGAGAATCATCAAGGGTTTAAATCTCTGGAAGAGCTT
GCGGAAGTCAAGGGTATAGGGCAGCGTTTTGTAGATAAAAATAGAGAAAAACTGAAAGAAATTTTCGTTATTAATTAA

Upstream 100 bases:

>100_bases
AAAAAATAATTTGAAATTGGCTAGACTCTTGTTTGAAAAATTGAGATACTCGCTCGCGGCTCTGGAACGAGCCGTATAGT
CCAACAATTAGGAGAAATTT

Downstream 100 bases:

>100_bases
TTCACATGCAATATAAAACGTAAATCATGTTTTATAAAGCAAATGAGATTGATCCCATATGAAAGCATTGCTTTTACTAT
GGGAACCGGTTAAAAACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MKARLIAILLSIIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVHSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEIFVIN

Sequences:

>Translated_105_residues
MKARLIAILLSIIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVHSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEIFVIN
>Mature_105_residues
MKARLIAILLSIIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVHSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEIFVIN

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11714; Mature: 11714

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARLIAILLSIIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVHSLTGSFKGIGKKR
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
AEAIIAYRENHQGFKSLEELAEVKGIGQRFVDKNREKLKEIFVIN
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MKARLIAILLSIIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVHSLTGSFKGIGKKR
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
AEAIIAYRENHQGFKSLEELAEVKGIGQRFVDKNREKLKEIFVIN
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]