Click here to switch to the map view.

The map label for this gene is 54293786

Identifier: 54293786

GI number: 54293786

Start: 958082

End: 959497

Strand: Direct

Name: 54293786

Synonym: lpl0842

Alternate gene names: NA

Gene position: 958082-959497 (Clockwise)

Preceding gene: 54293785

Following gene: 54293787

Centisome position: 28.64

GC content: 42.3

Gene sequence:

>1416_bases
ATGTTCAAACCCCAAGGATTGTATGATTACATATGCCAACAGTGGCAAGAAGAGATATTGCCAAGTTTATGTGATTACAT
AAAAATCCCTAATAAATCTCCTCACTTTGATGCAAAATGGGAAGAACATGGTTATATGGAGCAGGCAGTTAATCACATTG
CCAATTGGTGTAAGTCGCATGCTCCCAAAGGAATGACGCTGGAAATTGTTCGCCTGAAAAATAGGACTCCATTACTATTT
ATGGAAATTCCAGGCCAAATTGATGACACTGTGTTGCTTTATGGGCACTTGGATAAGCAACCTGAGATGTCAGGCTGGAG
TGACGATTTACATCCATGGAAACCCGTATTGAAAAATGGATTGTTATACGGAAGAGGAGGGGCAGATGATGGATATTCTG
CTTATGCATCACTTACGGCTCTTCGCGCATTGGAACAGCAAGGTTTGCCATATCCTCGTTGTATATTAATCATCGAGGCG
TGTGAGGAAAGTGGCAGTTACGATTTGCCTTTTTATATTGAGTTGCTAAAAGAGCGTATTGGTAAACCATCATTGGTTAT
TTGTCTTGATTCCGGAGCAGGTAATTATGAGCAGTTATGGATGACTACGTCATTACGCGGTAATTTGGTTGGTAAGTTAA
CTGTTGAATTAATTAATGAGGGGGTTCATTCGGGGAGCGCCAGTGGTATAGTGGCAGACAGTTTCAGAGTAGCTCGGCAA
TTGATCAGCAGGATAGAGGACGAAAACACCGGAGAGATAAAATTACCTCAGTTATATTGTGATATTCCTGATGAGAGAAT
AAAACAAGCGAAACAATGTGCGGAAATTCTAGGTGAGCAAGTTTATAGCGAATTCCCATGGATAGATTCTGCCAAACCCG
TTATTCAAGACAAACAGCAATTAATATTAAACAGAACATGGCGACCTGCCTTGACGGTGACTGGTGCAGATGGGTTTCCA
GCGATAGCTGATGCAGGGAACGTAATGCGCCCTGTTACGTCTTTGAAATTATCCATGCGTCTTCCACCACTGGTTGATCC
GGAAGCAGCTTCTTTTGCCATGGAAAAAGCCCTGACCCAAAACCCTCCCTACAATGCAAAGGTTGATTTTAAAATACAAA
ATGGAGGTTCCAAGGGATGGAATGCTCCTTTGCTTTCTGATTGGTTAGCGAAAGCGGCATCTGAAGCATCAATGACTTAT
TATGATAAACCTGCTGCCTACATGGGAGAAGGGGGCACCATTCCATTTATGAGTATGCTAGGCGAGCAATTTCCCGAAGC
ACAATTTATGATAACTGGTGTTTTAGGCCCCCATTCCAATGCCCATGGCCCGAACGAGTTCCTGCATTTGGACATGGTAA
AAAAACTCACCTCATGTGTCTCGTACGTTCTTTATAGTTTTTCACAGAAAAAATAA

Upstream 100 bases:

>100_bases
GACGTAATGCGAAAAAAAGATGAAATAGATAATAAAATCAAAGCATTAAAAATTGAGTCTGCCACTGATAAGATTGTGGC
AATTATCAAGGAGCAAGCAC

Downstream 100 bases:

>100_bases
TTTGAAATTGGCTAGACTCTTGTTTGAAAAATTGAGATACTCGCTCGCGGCTCTGGAACGAGCCGTATAGTCCAACAATT
AGGAGAAATTTATGAAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase; M20/M25/M40 Family Peptidase; Succinyl-Diaminopimelate Desuccinylase; Peptidase Family; ArgE/DapE/Acy1 Family Protein; Peptidase Dimerization Domain Protein; M20 Family Peptidase; Zinc Metallopeptidase; Beta-Ala-His Dipeptidase; N-Acyl-L-Amino Acid Amidohydrolase; Peptidase Dimerisation Domain-Containing Protein; Peptidase Or Deacetlylase Family Protein; Acetylornithine Deacetylase ArgE; Metallopeptidase; Thiol Dipeptidase; Succinyl-Diaminopimelate Desuccinylase Protein; Peptidase Dimerisation; Peptidase Dimerisation Domain Protein

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLF
MEIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTALRALEQQGLPYPRCILIIEA
CEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQ
LISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFP
AIADAGNVMRPVTSLKLSMRLPPLVDPEAASFAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTY
YDKPAAYMGEGGTIPFMSMLGEQFPEAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK

Sequences:

>Translated_471_residues
MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLF
MEIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTALRALEQQGLPYPRCILIIEA
CEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQ
LISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFP
AIADAGNVMRPVTSLKLSMRLPPLVDPEAASFAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTY
YDKPAAYMGEGGTIPFMSMLGEQFPEAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK
>Mature_471_residues
MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLF
MEIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTALRALEQQGLPYPRCILIIEA
CEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQ
LISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFP
AIADAGNVMRPVTSLKLSMRLPPLVDPEAASFAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTY
YDKPAAYMGEGGTIPFMSMLGEQFPEAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI271398239, Length=398, Percent_Identity=27.6381909547739, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI21071039, Length=395, Percent_Identity=27.5949367088608, Blast_Score=80, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17563146, Length=267, Percent_Identity=30.3370786516854, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI193211059, Length=388, Percent_Identity=25, Blast_Score=85, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6321159, Length=398, Percent_Identity=24.8743718592965, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6319758, Length=389, Percent_Identity=23.9074550128535, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24585880, Length=378, Percent_Identity=26.7195767195767, Blast_Score=76, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52546; Mature: 52546

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSH
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
APKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNG
CCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCC
LLYGRGGADDGYSAYASLTALRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLKERI
CEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCCHHHHHHHHHHC
GKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQ
CCCEEEEEECCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
LISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQ
HHHHHCCCCCCCEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASFAMEKALTQ
HHHCCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHC
NPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSML
CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCHHHHHH
GEQFPEAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK
HHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSH
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
APKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNG
CCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCC
LLYGRGGADDGYSAYASLTALRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLKERI
CEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCCHHHHHHHHHHC
GKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQ
CCCEEEEEECCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
LISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQ
HHHHHCCCCCCCEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASFAMEKALTQ
HHHCCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHC
NPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSML
CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCHHHHHH
GEQFPEAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK
HHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA