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The map label for this gene is 54293617

Identifier: 54293617

GI number: 54293617

Start: 724654

End: 725514

Strand: Reverse

Name: 54293617

Synonym: lpl0670

Alternate gene names: NA

Gene position: 725514-724654 (Counterclockwise)

Preceding gene: 54293618

Following gene: 54293616

Centisome position: 21.69

GC content: 34.84

Gene sequence:

>861_bases
ATGAAAATCAAGACTGTTACGAGATACTTACTACTTTTCTCAATATTTTTCCTGATAGGATTTAACAACGTATTTGCTCA
AAAAAAAGCCATAGCAATTACTATTGATGATTTGCCCTTTGTTGGTGAATACCGAAACTTTCATCTGAATATGATGATGA
ATACTATGAAAGACGAAAAAATCCCGGCAACAGGTTTTATCATTGCCAAAGAAGTCAGGCCTGATAATTGGGAAATACTT
CATAAATTTCGTGACGCAGGTTTCGGCTTGGGTAACCATACTTTTTCTCATGCCAATTTAAACAAACTTAAAGCGAAAGA
ATATATACAGGAAATTAAAGAAGCAGATTCACTTTTAATGCCCGTCCTCACTGAACCCAAGTATTTTCGTTATCCCTATT
TGGCAATGAGTTCTGGAAATAAAAAAAATAAAATTCTCTGCTACCTTGAAAAACATCACTATCAAGTTGCCCCGATTACC
ATTGACAGCAAAGATTTTGTCTTTAATCAACGCTTATTATCTGTGCCTGAATTAGGAAGGAGAGCTTACCTGGATGAGTT
GAAGCCATTTTATCTGGATTTTATCTGGCAACAAACGTTAAAAGCTGAAGAGCATACGCAATATCACCATAATCCAGATC
AAGCACAAATCCTGTTAATCCATGCTAACTTACTTAATGCCTATGTCCTGCCTGATATTATTAATTTATACAAGCAAAAT
GGTTACACGTTTGTGAGTCTGGAAGATGCCTTAAAAACATTCAAAGAAAACTATCATTGTCATAAAACCAGAATCCTTGC
AAAAAAACCTGTCGGAGAGGAAACGGATTTAAACATAGAATCATTTATGGATTGGGATTAA

Upstream 100 bases:

>100_bases
CTTATTTTAATAAGCTCTTAAATATAAGCTATTCATCGTAATTTTTGTTACAATAGTGACAATATTTTTCTCAATTGACA
TTACACATATTACATTTCGA

Downstream 100 bases:

>100_bases
TAAGCACCATTAAGTCTTCAGACTGTAAAATTTTTTTGCCAGACCAATGTTTCTGACCCCTATATAATAATCACCTTGCT
AACCAGACCATCCTTAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Polysaccharide Deacetylase-Related Protein; Polysaccharide Deacetylase Family Protein; Polysaccharide Deacetylase Domain Protein; Peptidoglycan GlcNAc Deacetylase Proteins; Polysaccharide Deacetylase Family

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEKIPATGFIIAKEVRPDNWEIL
HKFRDAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGNKKNKILCYLEKHHYQVAPIT
IDSKDFVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLLNAYVLPDIINLYKQN
GYTFVSLEDALKTFKENYHCHKTRILAKKPVGEETDLNIESFMDWD

Sequences:

>Translated_286_residues
MKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEKIPATGFIIAKEVRPDNWEIL
HKFRDAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGNKKNKILCYLEKHHYQVAPIT
IDSKDFVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLLNAYVLPDIINLYKQN
GYTFVSLEDALKTFKENYHCHKTRILAKKPVGEETDLNIESFMDWD
>Mature_286_residues
MKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEKIPATGFIIAKEVRPDNWEIL
HKFRDAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGNKKNKILCYLEKHHYQVAPIT
IDSKDFVFNQRLLSVPELGRRAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLLNAYVLPDIINLYKQN
GYTFVSLEDALKTFKENYHCHKTRILAKKPVGEETDLNIESFMDWD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33604; Mature: 33604

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEK
CCHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCCCCCEEEEHHHHHHCCCC
IPATGFIIAKEVRPDNWEILHKFRDAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLM
CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
PVLTEPKYFRYPYLAMSSGNKKNKILCYLEKHHYQVAPITIDSKDFVFNQRLLSVPELGR
HHHCCCCCEECCEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHCCHHHHH
RAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLLNAYVLPDIINLYKQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHCC
GYTFVSLEDALKTFKENYHCHKTRILAKKPVGEETDLNIESFMDWD
CEEEEEHHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MKIKTVTRYLLLFSIFFLIGFNNVFAQKKAIAITIDDLPFVGEYRNFHLNMMMNTMKDEK
CCHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCCCCCEEEEHHHHHHCCCC
IPATGFIIAKEVRPDNWEILHKFRDAGFGLGNHTFSHANLNKLKAKEYIQEIKEADSLLM
CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
PVLTEPKYFRYPYLAMSSGNKKNKILCYLEKHHYQVAPITIDSKDFVFNQRLLSVPELGR
HHHCCCCCEECCEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHCCHHHHH
RAYLDELKPFYLDFIWQQTLKAEEHTQYHHNPDQAQILLIHANLLNAYVLPDIINLYKQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHCC
GYTFVSLEDALKTFKENYHCHKTRILAKKPVGEETDLNIESFMDWD
CEEEEEHHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA