Click here to switch to the map view.

The map label for this gene is comM [H]

Identifier: 54293572

GI number: 54293572

Start: 676242

End: 677753

Strand: Reverse

Name: comM [H]

Synonym: lpl0624

Alternate gene names: 54293572

Gene position: 677753-676242 (Counterclockwise)

Preceding gene: 54293573

Following gene: 54293571

Centisome position: 20.26

GC content: 41.6

Gene sequence:

>1512_bases
ATGAATCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGCGTGCGCAGCGCCATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACCGTTAATCTTGGCCCTGCCAATTTACCTAAAACAGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCAGAACAAATTCCTCTCACCAACCTTGCAAATCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCCATTATACCTGCTGTTCTTGCCGCTCATAAAGACAATC
AACATCTTATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGCCACCCAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAGATCTTTTATTTAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGCA
TTCTGCTAAGTGGCGCGCCGGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTGCCCGAGCTATCCGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCTCCTTT
TCGTGCACCACATCATACTGCCTCACCTGTCGCGTTAGTCGGAGGAGGCAACCCACCAAAACCCGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTAGAGACACTTAGAGAACCTTTAGAG
TCAGGGCATATTTGCATTTCCAGAGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCTTATGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCGTTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
CCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGAGCAGAAGAACAATTGTTTCTCCGAGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGCGGTTACCATCGCTTACTAAAAGTAGGAAGAACCATTGCTGATATGAATAGC
AGTAAGAAAGTTCTGCTAAATCACTTACATCAGGCTTTATCTTACAAACAAAATTTACACTTACCAAAATGA

Upstream 100 bases:

>100_bases
TCATTAAACGGCAAGAAATTAAAAAATAATAAATAATAACTATTAGTCGTCCATAGGAAATTGGATTGACTTAAGTCCAA
CATAATAAGGAAAAAATCTT

Downstream 100 bases:

>100_bases
CGCTGACTACAAATGTAACCAGTACAGTATGATGATTAAGACATAACCACATATTTTTTAAATATTGCATTATACTTAAC
TTACACAGAATAAATTAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
TRLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGAEEQLFLREVMSKLKLSARGYHRLLKVGRTIADMNS
SKKVLLNHLHQALSYKQNLHLPK

Sequences:

>Translated_503_residues
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
TRLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGAEEQLFLREVMSKLKLSARGYHRLLKVGRTIADMNS
SKKVLLNHLHQALSYKQNLHLPK
>Mature_503_residues
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
TRLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGAEEQLFLREVMSKLKLSARGYHRLLKVGRTIADMNS
SKKVLLNHLHQALSYKQNLHLPK

Specific function: Induced during competence development. Not needed for DNA uptake. May be involved in a recombination step [H]

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=497, Percent_Identity=47.0824949698189, Blast_Score=450, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001208
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 54940; Mature: 54940

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEF
CCCEEECCCCCEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PCRKITVNLGPANLPKTGSGFDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVS
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
AIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNLREVCDYLCQGTSLQNLPPKP
HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCC
DLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
CEEECCCCCCHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCHH
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLF
HHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCEEE
LDELPEFNRQVLETLREPLESGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANC
EHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHEEECCCCEEEEEECCCCCCCCCCCCCCCE
LCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPNTRLEKQSPAIREKVTKMHEI
EECHHHHHHHHHHHCCHHHHHCCCEEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHH
QMARQDSLNANLNSKTCEMVCELGAEEQLFLREVMSKLKLSARGYHRLLKVGRTIADMNS
HHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SKKVLLNHLHQALSYKQNLHLPK
CHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEF
CCCEEECCCCCEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PCRKITVNLGPANLPKTGSGFDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVS
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
AIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNLREVCDYLCQGTSLQNLPPKP
HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCC
DLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
CEEECCCCCCHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCHH
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLF
HHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCEEE
LDELPEFNRQVLETLREPLESGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANC
EHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHEEECCCCEEEEEECCCCCCCCCCCCCCCE
LCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPNTRLEKQSPAIREKVTKMHEI
EECHHHHHHHHHHHCCHHHHHCCCEEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHH
QMARQDSLNANLNSKTCEMVCELGAEEQLFLREVMSKLKLSARGYHRLLKVGRTIADMNS
HHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SKKVLLNHLHQALSYKQNLHLPK
CHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 9457884 [H]