Click here to switch to the map view.

The map label for this gene is tnpA [H]

Identifier: 54293154

GI number: 54293154

Start: 227299

End: 228132

Strand: Reverse

Name: tnpA [H]

Synonym: lpl0196

Alternate gene names: 54293154

Gene position: 228132-227299 (Counterclockwise)

Preceding gene: 54293159

Following gene: 54293150

Centisome position: 6.82

GC content: 37.29

Gene sequence:

>834_bases
GTGTCTAAATCAATTGAACCACATCAGAAAGCAACTATTGAACGTTGGTATCATAGACGCTATCAAATAGAAGGAAATGA
ATTGCTCAACACGCCTTGTCCAAAAGTGTTAGGTCTTGATGAGCACTTCTTTAGTCGCAAACATGGCTTTGCAACTACCT
TATGTGACCTTAAAAAGCATAAAGTGTTTGATATCGTTAAAGGACGAAGAGAGGTCGATTTAAATCACTACCTTAACTCT
TTAAAGAGGAAAGACCGTGTTCAAGTGGTCTGTATGGATTTAAGTAGTACCTACCGCTCTCTGGTCAAAAAACATTTCCC
AAACGCTAAAATAGTAGCTGACAGGTTTCACGTCATTCGATTAGTACAACATCAATGTATGATGACTTATCGTGAGTTAT
CCAGCTCAATTAAAAATAACCGAGGTCTATTGGCTTTGTTGCGAACCAAACCAGATAAACTCACACCTCATAAGAAAATA
AAGCGAGACTCTTTCCTCGCTGAAAATCCAGCCATTGAAGCCATTTATCACTTCCAACAACAGCTTCATGAGCTATTAAT
GAATAAAACTCTAACTAAAGTACGATGCCGTAAAATCATTCCTCTCTTCTTAAAGATGATTCAGGACTTGAAACAAAGCC
CATTTAAATCATTAGTTGCCCTGGGAAAAACCCTCGATTCATGGAAAGAAGAAATTGCCTGTATGTGGCGGTTTAGTAAA
TCAAATGGCATCACTGAAGGATTTCATCGGAAAATGAAATTAATACAACGAAGAGCTTATGGGTTTAGAAACTTTGAAAA
CTACCGATTAAGAGTTAGAGTATTATGTGCTTGA

Upstream 100 bases:

>100_bases
CTCAGTTACTAAACTAATCGCATCCAGTTTAAATTCCTTTGTATATTTTCTTCTTATAGACATTGTGACCTCCAATTAAA
CAAATTATCTCTTAACTGGA

Downstream 100 bases:

>100_bases
TAAAATGCCCCCGTATTTGGGCTGTCTCTTGATCACATCTTCATCAACTCTGAAGCAATCCTGAGTCCTTCAACTCGTTC
CTGTAAGCGAAACCATCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MSKSIEPHQKATIERWYHRRYQIEGNELLNTPCPKVLGLDEHFFSRKHGFATTLCDLKKHKVFDIVKGRREVDLNHYLNS
LKRKDRVQVVCMDLSSTYRSLVKKHFPNAKIVADRFHVIRLVQHQCMMTYRELSSSIKNNRGLLALLRTKPDKLTPHKKI
KRDSFLAENPAIEAIYHFQQQLHELLMNKTLTKVRCRKIIPLFLKMIQDLKQSPFKSLVALGKTLDSWKEEIACMWRFSK
SNGITEGFHRKMKLIQRRAYGFRNFENYRLRVRVLCA

Sequences:

>Translated_277_residues
MSKSIEPHQKATIERWYHRRYQIEGNELLNTPCPKVLGLDEHFFSRKHGFATTLCDLKKHKVFDIVKGRREVDLNHYLNS
LKRKDRVQVVCMDLSSTYRSLVKKHFPNAKIVADRFHVIRLVQHQCMMTYRELSSSIKNNRGLLALLRTKPDKLTPHKKI
KRDSFLAENPAIEAIYHFQQQLHELLMNKTLTKVRCRKIIPLFLKMIQDLKQSPFKSLVALGKTLDSWKEEIACMWRFSK
SNGITEGFHRKMKLIQRRAYGFRNFENYRLRVRVLCA
>Mature_276_residues
SKSIEPHQKATIERWYHRRYQIEGNELLNTPCPKVLGLDEHFFSRKHGFATTLCDLKKHKVFDIVKGRREVDLNHYLNSL
KRKDRVQVVCMDLSSTYRSLVKKHFPNAKIVADRFHVIRLVQHQCMMTYRELSSSIKNNRGLLALLRTKPDKLTPHKKIK
RDSFLAENPAIEAIYHFQQQLHELLMNKTLTKVRCRKIIPLFLKMIQDLKQSPFKSLVALGKTLDSWKEEIACMWRFSKS
NGITEGFHRKMKLIQRRAYGFRNFENYRLRVRVLCA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 32865; Mature: 32734

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
SKSIEPHQKATIERWYHRRYQIEGNELLNTPCPKVLGLDEHFFSRKHGFATTLCDLKKH
CCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHCCCHHHHHHHCCHHHHHHHHHHH
KVFDIVKGRREVDLNHYLNSLKRKDRVQVVCMDLSSTYRSLVKKHFPNAKIVADRFHVIR
HHHHHHCCCHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LVQHQCMMTYRELSSSIKNNRGLLALLRTKPDKLTPHKKIKRDSFLAENPAIEAIYHFQQ
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
QLHELLMNKTLTKVRCRKIIPLFLKMIQDLKQSPFKSLVALGKTLDSWKEEIACMWRFSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
SNGITEGFHRKMKLIQRRAYGFRNFENYRLRVRVLCA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]