Click here to switch to the map view.

The map label for this gene is 54293046

Identifier: 54293046

GI number: 54293046

Start: 96522

End: 98045

Strand: Reverse

Name: 54293046

Synonym: lpl0083

Alternate gene names: NA

Gene position: 98045-96522 (Counterclockwise)

Preceding gene: 54293047

Following gene: 54293045

Centisome position: 2.93

GC content: 39.83

Gene sequence:

>1524_bases
ATGAAAAATAACAAACGTCATGTTTATGGTTTGATCCTCACTCTATTGCTTTTAGGATCAGGTATTTTTTTATATAGACA
TATCGTTCTCGATGTTCCTCTGACCGATACGGAAACGATCAACAGTTGGATGGTTGAATCCAATCTACGTTTTACCGCTG
ATAGAAATACGCCGATAAAGGCAAGCTTCAATATCCCTTACCTGCCCCCCAATTTTGCCATTCTCGATGAATATTTTGTG
TCCAGAAATTATGGTGTCACCACCAATTTAAACGGTTCCAATAGAGAAACCGTATGGTCTATAAGGCGTGGCCATGGTCC
TCAATCACTTTATTATAGAGCAATCTTCCGCCAAACGGACAGTGATGAGTCTTCTTTGCCTAAACCTTCGGTAACTAAAT
CACAACCTCTGAATGACAGTCAAAAATCGGCCGTTGAAACGATTACCAATCAAGTGAGATCAACATCAGCAGACATTCAA
ACATTTGCCCAAAGCACTATTAAAGAATTAAACAAAAGAGATGGTAATGCGAAGCTTTTAGTTGGGAACGAATTCAATGA
TGACAATATTATCAATGCCACCATTTTGATTCTCAATCAATCAAAGATTCCGGCCATTACAGTCCAGGGGATTTATCTAA
ACCAACAAAAAAAGGCCGATTTAAAATCCCTGCTCGCTGTGTTTAATGGAAAAAACTGGATTTACATTAACCCCAAAACT
GGCAGTGCCGGCTTGCCAAAAGAGTTTCTGATTTGGCAATATGGGAATGGCCCTCTATTTAATGTTGTTGGAGGTAATAG
AGCTCAATTTTCATTAACTGTATCGCCAACACCCATTAATGCCTTAAGTGTGGCCAAATCAAGAGGGCTAGAAGACTCGC
AACTTTTGCGCTTCTCCTTACTCCAGCTACCTGTCAATGTACAAGGGATCTATAAAATCTTGCTAACTGTTCCTATTGGA
GCATTTATCATTTTAATACTGCGTAATTTTATAGGCATTAAAACTTTTGGTACGTTTATGCCCGTCTTGATCGCCCTGGC
CTTTAGAGAGACTCATGTTGCATGGGGCATTACTTTATTTGTCATTATTATTTCTTTCGGGCTATTAGCCCGATTTTATC
TGGATCAATTAAGACTGCTGTTAGTCCCAAGACTTGCAGCCATTCTCACTGTAGTGATTCTATTAATGATCTTTATCAGC
GTTCTATGCCAAAATCTTAGTCTTGACACCGGTATGTCTGTCGCATTATTCCCTATGGTCATCTTAACCATGACTATCGA
GCGCATGTGCATCACATGGGATGAAAGAGGGGCTTCCGAAGCAATAAAATCAGGGATTGGCAGTCTTGCTGCAGCAGTTA
TTTCATATGGGGCGATGAGTTATGAGCCCTTACAATATTTGATCTTTGCCTTTCCCGAATTACTTTTGGTGCTTTTGTCC
TTGATTTTATGGTTCGGCCAATATCGTGGCTATCGTTTAGTCGAATTAAAACGCTTTAAATCACTTGCGAGTGCGATGAA
ATGA

Upstream 100 bases:

>100_bases
CTTTACCCTTTATTGTTGGGAAGAGATGCCATTATTGATTTTAATGGAGCCGTTGATCCTGCCCTTACTTTCACAACTAA
ATCCAAGAGCCCAGTGAACA

Downstream 100 bases:

>100_bases
TTAACCTGTTTAGGCGCCTGAAAAATCATGGGGTTTTAAGCATTAACCAGCGGAATACGGATTTTGTATTACGATACAAT
CCAAGAAAGTTATTTCCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-Associated HD Superfamily Hydrolase; GoNADoliberin III-Like Protein; Transglutaminase-Like; Transglutaminase Domain-Containing Protein

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MKNNKRHVYGLILTLLLLGSGIFLYRHIVLDVPLTDTETINSWMVESNLRFTADRNTPIKASFNIPYLPPNFAILDEYFV
SRNYGVTTNLNGSNRETVWSIRRGHGPQSLYYRAIFRQTDSDESSLPKPSVTKSQPLNDSQKSAVETITNQVRSTSADIQ
TFAQSTIKELNKRDGNAKLLVGNEFNDDNIINATILILNQSKIPAITVQGIYLNQQKKADLKSLLAVFNGKNWIYINPKT
GSAGLPKEFLIWQYGNGPLFNVVGGNRAQFSLTVSPTPINALSVAKSRGLEDSQLLRFSLLQLPVNVQGIYKILLTVPIG
AFIILILRNFIGIKTFGTFMPVLIALAFRETHVAWGITLFVIIISFGLLARFYLDQLRLLLVPRLAAILTVVILLMIFIS
VLCQNLSLDTGMSVALFPMVILTMTIERMCITWDERGASEAIKSGIGSLAAAVISYGAMSYEPLQYLIFAFPELLLVLLS
LILWFGQYRGYRLVELKRFKSLASAMK

Sequences:

>Translated_507_residues
MKNNKRHVYGLILTLLLLGSGIFLYRHIVLDVPLTDTETINSWMVESNLRFTADRNTPIKASFNIPYLPPNFAILDEYFV
SRNYGVTTNLNGSNRETVWSIRRGHGPQSLYYRAIFRQTDSDESSLPKPSVTKSQPLNDSQKSAVETITNQVRSTSADIQ
TFAQSTIKELNKRDGNAKLLVGNEFNDDNIINATILILNQSKIPAITVQGIYLNQQKKADLKSLLAVFNGKNWIYINPKT
GSAGLPKEFLIWQYGNGPLFNVVGGNRAQFSLTVSPTPINALSVAKSRGLEDSQLLRFSLLQLPVNVQGIYKILLTVPIG
AFIILILRNFIGIKTFGTFMPVLIALAFRETHVAWGITLFVIIISFGLLARFYLDQLRLLLVPRLAAILTVVILLMIFIS
VLCQNLSLDTGMSVALFPMVILTMTIERMCITWDERGASEAIKSGIGSLAAAVISYGAMSYEPLQYLIFAFPELLLVLLS
LILWFGQYRGYRLVELKRFKSLASAMK
>Mature_507_residues
MKNNKRHVYGLILTLLLLGSGIFLYRHIVLDVPLTDTETINSWMVESNLRFTADRNTPIKASFNIPYLPPNFAILDEYFV
SRNYGVTTNLNGSNRETVWSIRRGHGPQSLYYRAIFRQTDSDESSLPKPSVTKSQPLNDSQKSAVETITNQVRSTSADIQ
TFAQSTIKELNKRDGNAKLLVGNEFNDDNIINATILILNQSKIPAITVQGIYLNQQKKADLKSLLAVFNGKNWIYINPKT
GSAGLPKEFLIWQYGNGPLFNVVGGNRAQFSLTVSPTPINALSVAKSRGLEDSQLLRFSLLQLPVNVQGIYKILLTVPIG
AFIILILRNFIGIKTFGTFMPVLIALAFRETHVAWGITLFVIIISFGLLARFYLDQLRLLLVPRLAAILTVVILLMIFIS
VLCQNLSLDTGMSVALFPMVILTMTIERMCITWDERGASEAIKSGIGSLAAAVISYGAMSYEPLQYLIFAFPELLLVLLS
LILWFGQYRGYRLVELKRFKSLASAMK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56658; Mature: 56658

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNKRHVYGLILTLLLLGSGIFLYRHIVLDVPLTDTETINSWMVESNLRFTADRNTPIK
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCHHHHHHHEECCCEEEECCCCCEE
ASFNIPYLPPNFAILDEYFVSRNYGVTTNLNGSNRETVWSIRRGHGPQSLYYRAIFRQTD
EECCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCC
SDESSLPKPSVTKSQPLNDSQKSAVETITNQVRSTSADIQTFAQSTIKELNKRDGNAKLL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
VGNEFNDDNIINATILILNQSKIPAITVQGIYLNQQKKADLKSLLAVFNGKNWIYINPKT
ECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCC
GSAGLPKEFLIWQYGNGPLFNVVGGNRAQFSLTVSPTPINALSVAKSRGLEDSQLLRFSL
CCCCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHH
LQLPVNVQGIYKILLTVPIGAFIILILRNFIGIKTFGTFMPVLIALAFRETHVAWGITLF
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIIISFGLLARFYLDQLRLLLVPRLAAILTVVILLMIFISVLCQNLSLDTGMSVALFPMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ILTMTIERMCITWDERGASEAIKSGIGSLAAAVISYGAMSYEPLQYLIFAFPELLLVLLS
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LILWFGQYRGYRLVELKRFKSLASAMK
HHHHHHHCCCCEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNNKRHVYGLILTLLLLGSGIFLYRHIVLDVPLTDTETINSWMVESNLRFTADRNTPIK
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCHHHHHHHEECCCEEEECCCCCEE
ASFNIPYLPPNFAILDEYFVSRNYGVTTNLNGSNRETVWSIRRGHGPQSLYYRAIFRQTD
EECCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCC
SDESSLPKPSVTKSQPLNDSQKSAVETITNQVRSTSADIQTFAQSTIKELNKRDGNAKLL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
VGNEFNDDNIINATILILNQSKIPAITVQGIYLNQQKKADLKSLLAVFNGKNWIYINPKT
ECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCC
GSAGLPKEFLIWQYGNGPLFNVVGGNRAQFSLTVSPTPINALSVAKSRGLEDSQLLRFSL
CCCCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHH
LQLPVNVQGIYKILLTVPIGAFIILILRNFIGIKTFGTFMPVLIALAFRETHVAWGITLF
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIIISFGLLARFYLDQLRLLLVPRLAAILTVVILLMIFISVLCQNLSLDTGMSVALFPMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ILTMTIERMCITWDERGASEAIKSGIGSLAAAVISYGAMSYEPLQYLIFAFPELLLVLLS
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LILWFGQYRGYRLVELKRFKSLASAMK
HHHHHHHCCCCEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA