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The map label for this gene is yafC [H]

Identifier: 54293019

GI number: 54293019

Start: 59573

End: 60481

Strand: Direct

Name: yafC [H]

Synonym: lpl0055

Alternate gene names: 54293019

Gene position: 59573-60481 (Clockwise)

Preceding gene: 54293013

Following gene: 54293020

Centisome position: 1.78

GC content: 38.5

Gene sequence:

>909_bases
ATGATAAATTTTTCACAAATCCAGGTATTTATTGCAATTGTCGAATCTGGTGGATTTATTGCTGCTGGAGAGAAGATGCA
TCGTTCACAGCCGGCAATCACTAATGCCATAAAAAAATTGGAGTCCAGCCTGGGCTTCGAACTGTTTGATAGAAAAGTAT
ACCGACCTCAACTCACTGCGAAGGGTAAAGCTTTTTATCAAAAAGCAAAAGAAGTGGTCGCTCAATTTATGCAACTGGAA
AATAGTGCTGAAACATTGAGATCAGGAGTAGAAACACAATTTTCTATAGATCTCGATATTGCTTTACCATTGCCGGGATA
TGCTCCGCTTATTCAATCTTTCATAAGACAATATCCCGAAACTTGTTTTTCACTAAGTAACAATACTTTTGTTCGATGTC
TTGAGCGCCTGGAAAGAAGAGAGTGCCATTTATGTATAGCTGCAAGCCATATTCGTTCTCCACAGATAGAATATTTGCGT
ATGCCTTCCATACGAATGATTCCAGTTGCGAGCAGGGACTATTATGACCAGCATAAAGAACGAATAAATAATCCCAAACT
GGGAATATACTGCATGCAAATTATGATAGCTGGCACACAACAGGAATTATATCAACTCAAGATTGAGCCATTAAGTCATT
CTATGCCCAAATGGTTAGTGGGTGATATGTATATTCGTAAACAATTGATTTTATCGGGTATGGGTATTGGCCGTTTACCG
GATCATCTGGTTGAAAAGGAGTTGGCAGAGGGTTCTTTGGTTCAGTTAAATACCAGTGATTATGTAGCCGTTACTATGGA
TATTTATGCTATGCGGTTAAATAATCAAGAGCATGGTAAGGTCTCCAATTATGCTTGGCAGTCACTAAAAAGTTATGCTG
AAGACACAGTATCTCCCGATTTGAAATAA

Upstream 100 bases:

>100_bases
CTCCAGTCAGTATTAAAATCAATTCATCAAGGGTTTACCATAACTATAAAGATCATATAATTAAAATATTATTTTATAAT
TATCTTGATAATTTTTAGTT

Downstream 100 bases:

>100_bases
CCAATTTTTGCGTTTGCTTGCTAATTCAAGCAGTTTGGTGGACCGAATATTTGAAAAACAGGAGATGATTCATTGACATA
AAACCAAGATAAGCCTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTAKGKAFYQKAKEVVAQFMQLE
NSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPETCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLR
MPSIRMIPVASRDYYDQHKERINNPKLGIYCMQIMIAGTQQELYQLKIEPLSHSMPKWLVGDMYIRKQLILSGMGIGRLP
DHLVEKELAEGSLVQLNTSDYVAVTMDIYAMRLNNQEHGKVSNYAWQSLKSYAEDTVSPDLK

Sequences:

>Translated_302_residues
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTAKGKAFYQKAKEVVAQFMQLE
NSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPETCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLR
MPSIRMIPVASRDYYDQHKERINNPKLGIYCMQIMIAGTQQELYQLKIEPLSHSMPKWLVGDMYIRKQLILSGMGIGRLP
DHLVEKELAEGSLVQLNTSDYVAVTMDIYAMRLNNQEHGKVSNYAWQSLKSYAEDTVSPDLK
>Mature_302_residues
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTAKGKAFYQKAKEVVAQFMQLE
NSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPETCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLR
MPSIRMIPVASRDYYDQHKERINNPKLGIYCMQIMIAGTQQELYQLKIEPLSHSMPKWLVGDMYIRKQLILSGMGIGRLP
DHLVEKELAEGSLVQLNTSDYVAVTMDIYAMRLNNQEHGKVSNYAWQSLKSYAEDTVSPDLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=279, Percent_Identity=28.673835125448, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789492, Length=254, Percent_Identity=26.3779527559055, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082024, Length=252, Percent_Identity=25, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1786508, Length=249, Percent_Identity=25.3012048192771, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790783, Length=294, Percent_Identity=25.5102040816327, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788887, Length=195, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=160, Percent_Identity=29.375, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34493; Mature: 34493

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTA
CCCHHHHHEEEEEEECCCEEECCHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
KGKAFYQKAKEVVAQFMQLENSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPE
CHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHH
TCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLRMPSIRMIPVASRDYYDQHKE
HHHHCCCCHHHHHHHHHHHHHHHEEEEHHHCCCCCHHEEECCCEEEEEECCCHHHHHHHH
RINNPKLGIYCMQIMIAGTQQELYQLKIEPLSHSMPKWLVGDMYIRKQLILSGMGIGRLP
HCCCCCHHHHHHHHHHCCCHHHHHEEECCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
DHLVEKELAEGSLVQLNTSDYVAVTMDIYAMRLNNQEHGKVSNYAWQSLKSYAEDTVSPD
HHHHHHHHCCCCEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
LK
CC
>Mature Secondary Structure
MINFSQIQVFIAIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGFELFDRKVYRPQLTA
CCCHHHHHEEEEEEECCCEEECCHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
KGKAFYQKAKEVVAQFMQLENSAETLRSGVETQFSIDLDIALPLPGYAPLIQSFIRQYPE
CHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHH
TCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLRMPSIRMIPVASRDYYDQHKE
HHHHCCCCHHHHHHHHHHHHHHHEEEEHHHCCCCCHHEEECCCEEEEEECCCHHHHHHHH
RINNPKLGIYCMQIMIAGTQQELYQLKIEPLSHSMPKWLVGDMYIRKQLILSGMGIGRLP
HCCCCCHHHHHHHHHHCCCHHHHHEEECCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
DHLVEKELAEGSLVQLNTSDYVAVTMDIYAMRLNNQEHGKVSNYAWQSLKSYAEDTVSPD
HHHHHHHHCCCCEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
LK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]