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The map label for this gene is yciM [H]

Identifier: 54297333

GI number: 54297333

Start: 1535338

End: 1536507

Strand: Direct

Name: yciM [H]

Synonym: lpp1378

Alternate gene names: 54297333

Gene position: 1535338-1536507 (Clockwise)

Preceding gene: 54297332

Following gene: 54297334

Centisome position: 43.82

GC content: 39.06

Gene sequence:

>1170_bases
ATGATTAATTTATGGCCACTGTTGTTACCTGCTGCCGCATGGTCTGGTTGGTGGCTGGCTAACCGCAGTAATTCCAATAA
AGATGCTCATGTCCACAATCGCTTATCGCGAGAATATGTAGTTGGACTTAATTATTTATTAAATGAACAATCTGATAAAG
CGGTTGATGTATTTATCAAGCTTCTAGAAGTTGATAGCGATACAGTAGAAACCCATCTTGCACTGGGTAGCTTGTTCAGG
CGTAGAGGGGAAGTAGACAGGGCTATTCGTATTCATCAAAATTTAATCGCCAGACCTCAATTAAGTATTCAACAGCGAAA
GGAAGCCCTAATGGCTTTAGGGCAAGATTATATGAGTGCTGGAGTATTTGACCGAGCTGAACGTATATTCCTTGAGGTTG
TTGAGTTGGGCGGGAGTAGAGATACAAGCAGTCTTCAAGGATTATTAGCAATTTACCAACAAGAAAAAGCTTGGGAAAAA
GCTTTAGATATTATTAAGAAACTGGAAATTTCTACCGGAGCCAGTTTCCACAATCAAGCAGCTCATTATTACTGTGAAAT
GGCTAGTCAAGCGCTTAAAATCAATGCAATGGATAGAGCAATTTATTGTATAAAGCAAGCAATGAATGTTGATCCGGAGT
CCGTAAGAGCCAGTTTGATGAATGCTACAATTGAAATAAAAGAAGGCCGCTATAAACAGGCTATTCGATCTTTAAAAAGA
GTGCCGCAGCAGGATGCAGAGTTTTTAACCGAAATCATTGAACCATTAGTTCTTTGTCATAAAGAGCTGGACTCCATGCC
GGATTGTATTCACTATCTTGAGCAAACTTTGGAAAAACATCCGCGAGCCTCTGTAATTTTCGTTATTGCTGATTATTTGC
GACAAAATAAGGGTATGGATATTGCAATTGACTTTGTGGCTGATAATTTAAGCAAACATCCATCGATAAGAGGTTTGAAT
CGTTTGATTTATTGGCACTTGGAGTCTGCTCATGGAAAAGTACGTGAAAAACTGCAAATGCTTTATGATATTACTAGCAA
GTTTTTAGATAATAAGCCCATATATCGATGTGGGCATTGTGGTTTTGGTGGTAAACATTTACATTGGCATTGCCCAAGTT
GTAAACAGTGGGGTAGAATGAAGCCTATCCATGGTTTGGAAGGGGATTAA

Upstream 100 bases:

>100_bases
ACTGAAAAAGAAATTAAGAATTTACGTTCAATACCCTTACAAGATCAACATTAATTTTATTATTAGTGGAAACTCGATAC
GCAGAGAGGAAAATTAATAG

Downstream 100 bases:

>100_bases
CCTGAGACATACTCTCAGAAAGTTAATGAACAGTTGCATATTAGCTTAGTATCGTAATTCAAATTTGTTATTGCAAATTA
AGTAAAACAATTCGAATAGG

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MINLWPLLLPAAAWSGWWLANRSNSNKDAHVHNRLSREYVVGLNYLLNEQSDKAVDVFIKLLEVDSDTVETHLALGSLFR
RRGEVDRAIRIHQNLIARPQLSIQQRKEALMALGQDYMSAGVFDRAERIFLEVVELGGSRDTSSLQGLLAIYQQEKAWEK
ALDIIKKLEISTGASFHNQAAHYYCEMASQALKINAMDRAIYCIKQAMNVDPESVRASLMNATIEIKEGRYKQAIRSLKR
VPQQDAEFLTEIIEPLVLCHKELDSMPDCIHYLEQTLEKHPRASVIFVIADYLRQNKGMDIAIDFVADNLSKHPSIRGLN
RLIYWHLESAHGKVREKLQMLYDITSKFLDNKPIYRCGHCGFGGKHLHWHCPSCKQWGRMKPIHGLEGD

Sequences:

>Translated_389_residues
MINLWPLLLPAAAWSGWWLANRSNSNKDAHVHNRLSREYVVGLNYLLNEQSDKAVDVFIKLLEVDSDTVETHLALGSLFR
RRGEVDRAIRIHQNLIARPQLSIQQRKEALMALGQDYMSAGVFDRAERIFLEVVELGGSRDTSSLQGLLAIYQQEKAWEK
ALDIIKKLEISTGASFHNQAAHYYCEMASQALKINAMDRAIYCIKQAMNVDPESVRASLMNATIEIKEGRYKQAIRSLKR
VPQQDAEFLTEIIEPLVLCHKELDSMPDCIHYLEQTLEKHPRASVIFVIADYLRQNKGMDIAIDFVADNLSKHPSIRGLN
RLIYWHLESAHGKVREKLQMLYDITSKFLDNKPIYRCGHCGFGGKHLHWHCPSCKQWGRMKPIHGLEGD
>Mature_389_residues
MINLWPLLLPAAAWSGWWLANRSNSNKDAHVHNRLSREYVVGLNYLLNEQSDKAVDVFIKLLEVDSDTVETHLALGSLFR
RRGEVDRAIRIHQNLIARPQLSIQQRKEALMALGQDYMSAGVFDRAERIFLEVVELGGSRDTSSLQGLLAIYQQEKAWEK
ALDIIKKLEISTGASFHNQAAHYYCEMASQALKINAMDRAIYCIKQAMNVDPESVRASLMNATIEIKEGRYKQAIRSLKR
VPQQDAEFLTEIIEPLVLCHKELDSMPDCIHYLEQTLEKHPRASVIFVIADYLRQNKGMDIAIDFVADNLSKHPSIRGLN
RLIYWHLESAHGKVREKLQMLYDITSKFLDNKPIYRCGHCGFGGKHLHWHCPSCKQWGRMKPIHGLEGD

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=380, Percent_Identity=40, Blast_Score=314, Evalue=7e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44541; Mature: 44541

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLWPLLLPAAAWSGWWLANRSNSNKDAHVHNRLSREYVVGLNYLLNEQSDKAVDVFIK
CCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LLEVDSDTVETHLALGSLFRRRGEVDRAIRIHQNLIARPQLSIQQRKEALMALGQDYMSA
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GVFDRAERIFLEVVELGGSRDTSSLQGLLAIYQQEKAWEKALDIIKKLEISTGASFHNQA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AHYYCEMASQALKINAMDRAIYCIKQAMNVDPESVRASLMNATIEIKEGRYKQAIRSLKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHH
VPQQDAEFLTEIIEPLVLCHKELDSMPDCIHYLEQTLEKHPRASVIFVIADYLRQNKGMD
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCE
IAIDFVADNLSKHPSIRGLNRLIYWHLESAHGKVREKLQMLYDITSKFLDNKPIYRCGHC
EEEHHHHHHHHCCCCHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GFGGKHLHWHCPSCKQWGRMKPIHGLEGD
CCCCCEEEEECCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MINLWPLLLPAAAWSGWWLANRSNSNKDAHVHNRLSREYVVGLNYLLNEQSDKAVDVFIK
CCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LLEVDSDTVETHLALGSLFRRRGEVDRAIRIHQNLIARPQLSIQQRKEALMALGQDYMSA
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GVFDRAERIFLEVVELGGSRDTSSLQGLLAIYQQEKAWEKALDIIKKLEISTGASFHNQA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AHYYCEMASQALKINAMDRAIYCIKQAMNVDPESVRASLMNATIEIKEGRYKQAIRSLKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHH
VPQQDAEFLTEIIEPLVLCHKELDSMPDCIHYLEQTLEKHPRASVIFVIADYLRQNKGMD
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCE
IAIDFVADNLSKHPSIRGLNRLIYWHLESAHGKVREKLQMLYDITSKFLDNKPIYRCGHC
EEEHHHHHHHHCCCCHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GFGGKHLHWHCPSCKQWGRMKPIHGLEGD
CCCCCEEEEECCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]