Click here to switch to the map view.

The map label for this gene is ybeQ [H]

Identifier: 54297265

GI number: 54297265

Start: 1462790

End: 1463920

Strand: Direct

Name: ybeQ [H]

Synonym: lpp1310

Alternate gene names: 54297265

Gene position: 1462790-1463920 (Clockwise)

Preceding gene: 54297262

Following gene: 54297273

Centisome position: 41.75

GC content: 41.11

Gene sequence:

>1131_bases
ATGCAAGGTTTTGTCTTGGCTCTGTTATTAGCAATTAGCAGTAGTGTTTTTGCTGATGAATTAGTAGGTTTTGCAGCATT
TGAAAATGGCGACTACACCACAGCCTATCCACATTTAATGCAGGCTGCCAAAGAAGGTAATGAGGAAGCCATGTATTTAT
TGGGGCGCATGTATCAATACGGATATGGTGTGACAACTAATTACGAAGAAGCCAGAAACTGGTATCAAAAGGCAGCTGAT
AAAAATAATGCATTGGCTCAATTAAGTTTGGGATTTATGTACGATACAGGTAAGGGGGTATCTCAGGATTTTGCTGAGGC
CTTCAAATGGTATATGAAGGCAGCAGAGCAAGGAAATCCGATAGCACAAAGAAATATTGGATTAATGTATGCCACAGGAG
ATGGTGTAGCTGCCAGTGATGACAAAGCATTCACCTGGTTTAAAAAGGCCGCAGAACAAGGCTATAGCAAGGCACAAGTG
AATTTGGGTTATCAGTACATGATGGGTAAAGGAACTCCAAAAGATGTAAAAAAAGCATTTGAATGGTATCAAAAGGCGGC
AGAGCAGGGGGATGAAAAGGGCGAATACAGTCTAGGTCTATTGTATACAGGCCAGGAAGGTGGGATTAGTGCGGATGATA
AAGCCGCTTTTTACTGGTTTTCACAAGCAGCCAATCATGGACATGTCAACGCACAAACCTATTTAGCTTACTATTATCTT
AAAGGGTATGGTGTAGATGCTGATCCTGTGAAAGCAGCTTATTGGTACCAATCTGCAGCAGAAAAGGGACAACCTGAAGC
ACAGGCACAATTAGGACAATTGTTATTAACTGGTACAGGTGTTGATAAAGATTACCAACAGGCAGCTTACTGGTTTGGTA
AGTCAGCACATCAGGGAAATCCTGTTGGACAAGCCAAATTGGGGTATATGTATTTAGCAGGATTAGGAGTCAACAAGAGC
TTGGTTAAAGCTTACGCCTGGTTAAAAATTGCTGCTGAAAATAAAAATGAGGAAGCAGCAAAGCAACTTAAATCTTTGGA
AGCCAAGTTGACCGAACCTGAAAAATTGGAAGCAGAGAAAATGATCAAGGATTTGGGCCCATTAGAAAGCAAAGAGAATT
ATGAGGACTAA

Upstream 100 bases:

>100_bases
GGACTTATTTTGGATCGTGATGTTTTAAATTGATCAATAACTTGCTTTGTTATTTCTTTATTCTACTCTTAAAATAATAG
GAGATTGAAATGGAGCAGAT

Downstream 100 bases:

>100_bases
AGTTAAAAACTGAATCCAGAAGATTATAGTTGTAACTTGATAATTTGTTGTGTGTTTAAAATAGTGGTTTAAGTGAGCTA
GTTTAATTGATGAGTAGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MQGFVLALLLAISSSVFADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEEARNWYQKAAD
KNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQV
NLGYQYMMGKGTPKDVKKAFEWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGNPVGQAKLGYMYLAGLGVNKS
LVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEKMIKDLGPLESKENYED

Sequences:

>Translated_376_residues
MQGFVLALLLAISSSVFADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEEARNWYQKAAD
KNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQV
NLGYQYMMGKGTPKDVKKAFEWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGNPVGQAKLGYMYLAGLGVNKS
LVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEKMIKDLGPLESKENYED
>Mature_376_residues
MQGFVLALLLAISSSVFADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEEARNWYQKAAD
KNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQV
NLGYQYMMGKGTPKDVKKAFEWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGNPVGQAKLGYMYLAGLGVNKS
LVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEKMIKDLGPLESKENYED

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=311, Percent_Identity=29.2604501607717, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI151301150, Length=332, Percent_Identity=29.8192771084337, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI217330658, Length=173, Percent_Identity=32.3699421965318, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI217330656, Length=173, Percent_Identity=32.3699421965318, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI154689719, Length=245, Percent_Identity=28.9795918367347, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI33620759, Length=233, Percent_Identity=32.618025751073, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI87081769, Length=262, Percent_Identity=38.1679389312977, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786867, Length=166, Percent_Identity=33.7349397590361, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17563256, Length=313, Percent_Identity=27.7955271565495, Blast_Score=110, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6319410, Length=295, Percent_Identity=29.1525423728814, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6319998, Length=257, Percent_Identity=27.6264591439689, Blast_Score=63, Evalue=9e-11,
Organism=Drosophila melanogaster, GI21355295, Length=314, Percent_Identity=32.1656050955414, Blast_Score=124, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 41588; Mature: 41588

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGFVLALLLAISSSVFADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQY
CCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
GYGVTTNYEEARNWYQKAADKNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNP
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
IAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQVNLGYQYMMGKGTPKDVKKAF
CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEEECCCCHHHHHHHH
EWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHEEEEHHCCCCCCCCHHHEEEEEEE
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGN
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCC
PVGQAKLGYMYLAGLGVNKSLVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEK
CCCCHHHCEEEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHH
MIKDLGPLESKENYED
HHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQGFVLALLLAISSSVFADELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQY
CCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
GYGVTTNYEEARNWYQKAADKNNALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAAEQGNP
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
IAQRNIGLMYATGDGVAASDDKAFTWFKKAAEQGYSKAQVNLGYQYMMGKGTPKDVKKAF
CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEEECCCCHHHHHHHH
EWYQKAAEQGDEKGEYSLGLLYTGQEGGISADDKAAFYWFSQAANHGHVNAQTYLAYYYL
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHEEEEHHCCCCCCCCHHHEEEEEEE
KGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGN
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCC
PVGQAKLGYMYLAGLGVNKSLVKAYAWLKIAAENKNEEAAKQLKSLEAKLTEPEKLEAEK
CCCCHHHCEEEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHH
MIKDLGPLESKENYED
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]