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The map label for this gene is ygjR [C]

Identifier: 54297231

GI number: 54297231

Start: 1416975

End: 1418003

Strand: Direct

Name: ygjR [C]

Synonym: lpp1276

Alternate gene names: 54297231

Gene position: 1416975-1418003 (Clockwise)

Preceding gene: 54297228

Following gene: 54297237

Centisome position: 40.44

GC content: 36.64

Gene sequence:

>1029_bases
ATGGATAATGCGACAATAAAATGGGGAATTTTAGGAACAAGTTTTATCTCTGAAGTGATGGCTAATGCAATTCAGGAATC
AAAAACCAGTGAGCTTGTTGCTATTGGGAGTCGAACAAGCGAGATAGCCAAACGATTTTCTGAAAAATTCGCTATTCCAA
AATATTATGACAATTATCAATCATTAATTCTCGATAGTGATATAGATGTGGTTTATATAGGGTTGCCTAATCATCTGCAT
AAAGAATGGATTATTCGTTGTGCGCAGGCAGGAAAAAATATTTTGTGTGAAAAACCTTTTGTTATTGGTATAGAAGAAAT
CCATGAGGTTATTTCAGTAATTGAGAGAACAAATGTTTTTTGTATGGAAGCTCTAATGTACCGATATCATCCCTTTATAA
AAAAATTACAAGAGATCATTCAAAGCAACACAATAGGTAAGATAAAGTTGTATAATGCGACATACACAGCAAACATTGCA
GAAATAGCCAATCCTGTTGCGGGAGGAAGTATACGTAATCTCGGATGTTACCCAATTTCCTTAGTGAGGCTGCTTGCTAA
CGCAGAGCCAATCGAAATCCGTGGTATTGGAAGAATGAATTCCACGAATAACACGGATAGTCAAGCCAGCGTTCTTTTAA
AATTTGAAGACGATTCAATTGCAGCAGTTTCCACTGCCGATGATATTGAAATGCATTGGCAATTCGAGGTTTATGGAACA
AAAGGCCATTTAAAAGTAGACACGAATCCTTGGTTGCCTGGCTGTGAGGGTAACAAAATTTATCTCTCTCTCAATACTGA
ATCAACACCCAGAGAAATAAGCGTGAAAGCAGAAAAGTCACTTTATACCTATCAAATAGATTGTATCAATGAGCAAGTAT
TGAAAGGGGATTCCAGACAATTTAGCAAGATGTCTTTATTAGATAGCATGGGAAATACAATCGTTCTGGAAACCTGGCTA
AAACAAATACTCCCTTCAAAACCAAGCCTTGAATTATCCAGATTAAAAGACAGGCTGCCTCATGCATAA

Upstream 100 bases:

>100_bases
TTGGAGCAGGAAATTTAAGTGGTTTTTACTGCTATGGTTTTACTCGTGTCATTTATGCGTTTTAATATACAGTCAGCAAT
TTTTTAGCCGGAAGGAATAT

Downstream 100 bases:

>100_bases
GCAAAATGGTTCTGGTGATGCTAGTCAAATTTTCCGAGAAGAGAGTAATCTGTTTTTCCTTCGCGCCAGATACCATCCCA
ATTGACAGGTGGATTAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MDNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKYYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIKLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSTNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKGDSRQFSKMSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA

Sequences:

>Translated_342_residues
MDNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKYYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIKLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSTNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKGDSRQFSKMSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA
>Mature_342_residues
MDNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKYYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIKLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSTNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKGDSRQFSKMSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=256, Percent_Identity=28.125, Blast_Score=131, Evalue=1e-30,
Organism=Escherichia coli, GI145693182, Length=228, Percent_Identity=25, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24581115, Length=257, Percent_Identity=27.6264591439689, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24581117, Length=254, Percent_Identity=26.7716535433071, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24584727, Length=254, Percent_Identity=24.4094488188976, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38469; Mature: 38469

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKYYDNYQ
CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCHHHCCHH
SLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVF
HEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCEEECHHHHHHHHHHHHHCCHH
CMEALMYRYHPFIKKLQEIIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPIS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCHHHHCCCCCCCCCCCCCCHHHH
LVRLLANAEPIEIRGIGRMNSTNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
HHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEEEEC
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKGDSRQ
CCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEEECCHHHHCCCCHH
FSKMSLLDSMGNTIVLETWLKQILPSKPSLELSRLKDRLPHA
HHHHHHHHHCCCEEEHHHHHHHHCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSEIAKRFSEKFAIPKYYDNYQ
CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCHHHCCHH
SLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILCEKPFVIGIEEIHEVISVIERTNVF
HEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCEEECHHHHHHHHHHHHHCCHH
CMEALMYRYHPFIKKLQEIIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPIS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCHHHHCCCCCCCCCCCCCCHHHH
LVRLLANAEPIEIRGIGRMNSTNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
HHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEEEEC
KGHLKVDTNPWLPGCEGNKIYLSLNTESTPREISVKAEKSLYTYQIDCINEQVLKGDSRQ
CCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEEECCHHHHCCCCHH
FSKMSLLDSMGNTIVLETWLKQILPSKPSLELSRLKDRLPHA
HHHHHHHHHCCCEEEHHHHHHHHCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]