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The map label for this gene is nlpD [C]

Identifier: 54297201

GI number: 54297201

Start: 1383530

End: 1384273

Strand: Direct

Name: nlpD [C]

Synonym: lpp1246

Alternate gene names: 54297201

Gene position: 1383530-1384273 (Clockwise)

Preceding gene: 54297200

Following gene: 54297202

Centisome position: 39.49

GC content: 39.78

Gene sequence:

>744_bases
ATGATGCGCCTATTTCGCAAACAATTAATTTGTATTTTTTTTATCTTAAGTGTTGCTGGTTGTGGGACAAGAAGTGATTT
GGCTCCTGTTACCGAGCTAAAATGGCAGCCTTATTCAAAATATCAGAAATTCCATACGGTGCGATCAGGTGAGACCCTTT
ATGCCATAGCATTTCGTTATGATACTGATTATAGGCGGCTTGCGATCATCAATCACCTAAGGCCACCTTATTCCTTGCGA
GTAGGACAAGTTTTAAGTTTAAAAGGCATCGTGCCAAAATCAAATCACTTTCATTCAGCTCCCAGAGCTAACTTACATAT
TACCCATAAGCCAAAACAAAAAATTATTTATTCTCCAGCTTATAATGTACGTTCTTCCTCTGGTTGGCTGTGGCCAGTTA
CTGGTCGTGTTGTTACAACATTCATTCCTTCTCAGGGGAAAAAAGGCATAAATATTGCATGTAACAGAGGAGACAAAGTT
AGAGCTTCAGCAAGTGGAGTTGTGGCTTATGCTGGCAGCGGGTTGCCTGGGTATGGTAATTTAATCATTATTAAACACAG
TAATGAATATTTAACTGCATACGGTAACAATGCCAGAAATCTGGTGACAGAAGGGCAGCGTGTTAGTGCGGGGCAGGTAA
TAGCAGAAGCTGGTTTAATAGATAGATCATACTGGGGTGTTCATTTTGAAATTAGAAGAGCAGGGGTACCAGTTAATCCA
TTGAATTATCTACAAAAAGGTTGA

Upstream 100 bases:

>100_bases
ACCGCTTCATTTAGACATGACTCATTATAAGTTATTTGATCATTTATCTAACTTGCTTAACGAAATTTGCATAGAAAATT
AATAAATAATAAATGAGATA

Downstream 100 bases:

>100_bases
CATATAACTCATAGTTATAGCAACAATAGGCTTGTTAAGAAGTAAAAAACTATTTCAAGGCATAGCTAAACATATAGGTG
ATACAATGCAAGATGAAGAA

Product: novel lipoprotein homolog NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKV
RASASGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG

Sequences:

>Translated_247_residues
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKV
RASASGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG
>Mature_247_residues
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAIINHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKV
RASASGVVAYAGSGLPGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=247, Percent_Identity=36.0323886639676, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1789099, Length=254, Percent_Identity=35.8267716535433, Blast_Score=134, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27574; Mature: 27574

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRY
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEE
DTDYRRLAIINHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPA
CCCCCEEEEEHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCC
YNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVRASASGVVAYAGSGLPGYGN
CCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCC
LIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
EEEEEECCCEEEEECCCCCHHHCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCCCCCH
LNYLQKG
HHHHCCC
>Mature Secondary Structure
MMRLFRKQLICIFFILSVAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRY
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEE
DTDYRRLAIINHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKIIYSPA
CCCCCEEEEEHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCC
YNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVRASASGVVAYAGSGLPGYGN
CCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCC
LIIIKHSNEYLTAYGNNARNLVTEGQRVSAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
EEEEEECCCEEEEECCCCCHHHCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCCCCCH
LNYLQKG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]