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The map label for this gene is flgF [H]

Identifier: 54297183

GI number: 54297183

Start: 1362258

End: 1363004

Strand: Direct

Name: flgF [H]

Synonym: lpp1228

Alternate gene names: 54297183

Gene position: 1362258-1363004 (Clockwise)

Preceding gene: 54297182

Following gene: 54297184

Centisome position: 38.88

GC content: 40.96

Gene sequence:

>747_bases
ATGGAGCCTATCCTGTATAAGGCTGTTTCTGGCGGTCGTTCAGATTTTAAAAGGCAGGAAATGATCGCCAATAATTTGGC
AAATATTAACACCCCTGGATTTAAGGCCGATTTGTACCAGGCACAGACCATGTACATGAATAATGCAAATGGAAATAATC
AGTTCAATATGCATTCATTTATAACTCAAAATACCAATGGAGTGGACACTTCTCCTGGGGAAATTATTACGACAGGCAGA
GATTTGGATGTAGCAATTGATGGAGACGGGTGGATGGCTGTTCAGGACAGCCAAGGTCGTGAAGCTTATACCAGAGGGGG
TAGTTTGCGTTTGAATGCTAATGGACAGTTAATTACTGCCTCGGGTAAGGTTGTTTTGGGCGATGGAGGTCCCATTTCTA
TCCCGCCTGCTCAATCCATAGAGATTGGTTCGGACGGAACTATATCGATTGTCCCTTTAGAAGGCGATGTCAAATCTCTG
GCAATCTTAGACAGGATTAAGTTAGTTACGCTGGATAGAAATAATATCTATAAAAATGATGAAGGTTTGATCCAACTGAG
ATCAGGTGCGGCTACCACTAATAGTAATATTAAATTGCAAAGCGGTGCATTGGAGGGGAGTAATGTAAATGCGATTGATC
AAATGGTAGCTATGATTAGTGCTGGTCGTGAATTTGATGCTCAAATGAAGTTATTATCAACAGTCGATGATAATGGACAA
AAATTGGCACAGCTATTGCAAGAATAA

Upstream 100 bases:

>100_bases
TTAATTAGTGCCCAGCGCAATTTTCAAGCGAATGCTCAAACCATTCGTACAGGCGATGCGATTACTCAAACGATCATCAA
TATTCGCTAGGAGGTAAGCT

Downstream 100 bases:

>100_bases
ACTTAATTAATTTAATTATTATTTCAGTTAGGGGAAGCCGCTTTCCAATGATTAGGAACTATAGATGGTTTCAGGAGCGC
AAGGTGTTGATAGACTGAAA

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MEPILYKAVSGGRSDFKRQEMIANNLANINTPGFKADLYQAQTMYMNNANGNNQFNMHSFITQNTNGVDTSPGEIITTGR
DLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNANGQLITASGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSL
AILDRIKLVTLDRNNIYKNDEGLIQLRSGAATTNSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
KLAQLLQE

Sequences:

>Translated_248_residues
MEPILYKAVSGGRSDFKRQEMIANNLANINTPGFKADLYQAQTMYMNNANGNNQFNMHSFITQNTNGVDTSPGEIITTGR
DLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNANGQLITASGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSL
AILDRIKLVTLDRNNIYKNDEGLIQLRSGAATTNSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
KLAQLLQE
>Mature_248_residues
MEPILYKAVSGGRSDFKRQEMIANNLANINTPGFKADLYQAQTMYMNNANGNNQFNMHSFITQNTNGVDTSPGEIITTGR
DLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNANGQLITASGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSL
AILDRIKLVTLDRNNIYKNDEGLIQLRSGAATTNSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
KLAQLLQE

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=253, Percent_Identity=36.7588932806324, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI1787318, Length=270, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 26535; Mature: 26535

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPILYKAVSGGRSDFKRQEMIANNLANINTPGFKADLYQAQTMYMNNANGNNQFNMHSF
CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEECCCCCCEEEEEEE
ITQNTNGVDTSPGEIITTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNANGQLITA
EECCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCCHHHCCCEEEECCCCEEEEE
SGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKND
CCEEEECCCCCEECCCCCCEEECCCCEEEEEEECCCHHHHEEEEEEEEEEEECCCCEECC
EGLIQLRSGAATTNSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
CCEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
KLAQLLQE
HHHHHHCC
>Mature Secondary Structure
MEPILYKAVSGGRSDFKRQEMIANNLANINTPGFKADLYQAQTMYMNNANGNNQFNMHSF
CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEECCCCCCEEEEEEE
ITQNTNGVDTSPGEIITTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNANGQLITA
EECCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCCHHHCCCEEEECCCCEEEEE
SGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKND
CCEEEECCCCCEECCCCCCEEECCCCEEEEEEECCCHHHHEEEEEEEEEEEECCCCEECC
EGLIQLRSGAATTNSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
CCEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
KLAQLLQE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]