Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 54297166

GI number: 54297166

Start: 1349033

End: 1349821

Strand: Direct

Name: yddE [C]

Synonym: lpp1211

Alternate gene names: 54297166

Gene position: 1349033-1349821 (Clockwise)

Preceding gene: 54297164

Following gene: 54297167

Centisome position: 38.5

GC content: 39.16

Gene sequence:

>789_bases
ATGAAAAGCTTACCAATCTACCAAGTGGATGCATTTGCCTCAAATTTATTCAAAGGTAATCCTGCCGCTGTTTGTCCTTT
GGATAAATGGTTAAGTGATGAGACTATGCAAGCCATTGCAGCTGAAAACAATTTATCTGAAACAGCCTTTTTTGCTCCCG
AAACCGATGGATACAGGATCCGGTGGTTTACCCCCAATGAAGAAGTGGCATTGTGCGGCCATGCCACTCTTGCCAGCTCT
TATGTACTTTTTAATCAATTGGGCTTTTCAGGGGAAGAAATTATATTTAATAGTTTGAGTGGTAAGCTATGGGTTAAAAA
CACAGATCAAGGCTTGGTTATGGATTTCCCAGTTCTGCCCTATGAAGAAATTAATTTCAGTGCCGAACTGCAGCATTTGA
ATTTAAAAAGGCCATTTAAAGCATTGCGAAGCCAATTTGATTTGATGTTTGTGTATCAAAATGCAGAAGAAGTAGTTGAG
GCAAAGCCTGATTTGAATGCTGTGGCTCATCTTGACTATAGGGGGTTAATATTAACTGCTCCAGGAATATCAACTGATGT
TTATTCTCGTTGTTTTTATCCTGGATGTAATGTGCCAGAAGACCCGGTAACAGGATCTGCTCATTGTGTTATTGCTCCTT
ATTGGTGTGAACAGTTAAGGAAGAACCATATAACTGCTTTACAAGGAAGCCTCAGACAAGGTGATCTTTATTGTGAAGTG
AAGGAAAACAGAGTATTGCTCTATGGAAATTGCCATCTTTATTTGGAAGGAAGAATATATTTGCCATGA

Upstream 100 bases:

>100_bases
TTTAGCAGAGAGGAAAGATACATCAATTTCTCATTATTAAATAGCTTGCTATATAATAACAGGCTATGTTATTATTCGCA
AGTTGTTTTAGGAGACATTT

Downstream 100 bases:

>100_bases
AATATTTAACAACCCCAAGGCTTTTGCTAAGAGCGTGGGATGAAGAAGATACTATCCCCTTCTATAGAATGAGTCAGGAT
CCTCGGGTCATGAAGTATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFAPETDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGSLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP

Sequences:

>Translated_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFAPETDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGSLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP
>Mature_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFAPETDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGSLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=292, Percent_Identity=36.3013698630137, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI74316009, Length=256, Percent_Identity=36.71875, Blast_Score=144, Evalue=8e-35,
Organism=Escherichia coli, GI1787737, Length=226, Percent_Identity=35.3982300884956, Blast_Score=89, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=314, Percent_Identity=33.7579617834395, Blast_Score=140, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI17542154, Length=314, Percent_Identity=33.7579617834395, Blast_Score=140, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI17542158, Length=311, Percent_Identity=33.1189710610932, Blast_Score=127, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17542152, Length=311, Percent_Identity=33.1189710610932, Blast_Score=127, Evalue=7e-30,
Organism=Saccharomyces cerevisiae, GI6321818, Length=292, Percent_Identity=29.1095890410959, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29534; Mature: 29534

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFAPETDGYRI
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCEEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCC
YEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVEAKPDLNAVAHLDYRGLILTA
HHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGSLRQGDLYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCEEEHHCCCCCCCEEEEE
KENRVLLYGNCHLYLEGRIYLP
ECCEEEEEEEEEEEEEEEEECC
>Mature Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFAPETDGYRI
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCEEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCC
YEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVEAKPDLNAVAHLDYRGLILTA
HHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGSLRQGDLYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCEEEHHCCCCCCCEEEEE
KENRVLLYGNCHLYLEGRIYLP
ECCEEEEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]