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The map label for this gene is ybbD [H]

Identifier: 54296905

GI number: 54296905

Start: 1049399

End: 1050475

Strand: Direct

Name: ybbD [H]

Synonym: lpp0946

Alternate gene names: 54296905

Gene position: 1049399-1050475 (Clockwise)

Preceding gene: 54296904

Following gene: 54296906

Centisome position: 29.95

GC content: 39.18

Gene sequence:

>1077_bases
TTGATTACAATAAGAAACAAAATCGGACAAATGCTGATTATGGGATTTCATGGTTCTGAGCTGCATGATAATAGTCCGGT
TGCTCAATGGTTATCTAATGATGGTCTCGGCGGAGTCTTGTTATTCGACAAAGATTTATCCACAGGGATTTATGGCAAGA
ATTTAAGGAATCAGGCTCAGATAAAGCAATTAATTCGACAGCTTAATCGTTATGCATCAATGATTTCAGGAGGTAATGAC
AATCTGCCTTTATTTACTGCGATTGATTACGAAGGTGGAGTGGTTGACAGACTAAGCAAGATAGAAGGCTGTCCGCCTAC
TATGAAGGCCAGGGAACTTGCAAAGTTATCCAGTGATGATTTTGATGAAGAAGTAACTCAAATGGCTATGACGTTGCAGT
CATTAGGTTTTAATTTAAATTTTGCCCCGGTTGTAGATTTAAATTTAAATGCTCATGCAGGGATTATTGGAAACTTGGGA
AGAAGCTTTTCTTCTAACCCAGAGGTTACTATTCGTTTGGCCAAGCAGTTCGTTGATGTTTTCAGTCGTTATGGTATTGC
TTGTGCGTATAAACATTTCCCCGGCCATGGCAGCGCCACTGGAGATACACATGAGGGATTTGTAGATGTTACAGAAACCT
TTCAAACCGATGAGCTAATTCCTTATCGAAGTTTATTAAAAGACCTGTCTAACCCTTTCATGGTAATGACGGCGCATGTG
ATTAATAAGCATTTGGATAGTAAGGGATTGCCTGCAACTCTGTCCTACGACGTTTTAACGTTATTGTTACGTCAAAGCAT
AGGATATGACGGGGTCATTATCAGCGATGATTTGCAAATGCATGCCATTTCAAATCACTATTCATTAGAAGATGCTCTTT
GTCTTACCATCAATGCCGGGGCTGATATGGTCATATTTGCCAATCAGCTTGGAACTATTACCCCACCGGAAGTTATAGAT
GTGATTGAAAAATTGGTAATTGACAAGCAAATTCCCTATCAACGTATTGATGAGGCGTACAGAAGAATAGTACGTCTGAA
GCAACAAATTATATGCAGTGAATTAATCAATACGTAA

Upstream 100 bases:

>100_bases
TACACATTGCGATACTGTTTATAGATAATGCGTAGCGGGCATAGCCAGAGAGAATATCTTTGTGTATGATTTTATGCTTA
TTTTGTGATGGAGCGAGTGA

Downstream 100 bases:

>100_bases
TGCCCATGCAAGTGGTAACTGGCGGGTTTATGAAACATTAAGTTACCACTGTAACTCCGCCCATTTGAGAGGCGCCATCT
TCTTTTACAGCATGAACAGA

Product: hypothetical protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQIKQLIRQLNRYASMISGGND
NLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDDFDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLG
RSFSSNPEVTIRLAKQFVDVFSRYGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPFMVMTAHV
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEDALCLTINAGADMVIFANQLGTITPPEVID
VIEKLVIDKQIPYQRIDEAYRRIVRLKQQIICSELINT

Sequences:

>Translated_358_residues
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQIKQLIRQLNRYASMISGGND
NLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDDFDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLG
RSFSSNPEVTIRLAKQFVDVFSRYGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPFMVMTAHV
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEDALCLTINAGADMVIFANQLGTITPPEVID
VIEKLVIDKQIPYQRIDEAYRRIVRLKQQIICSELINT
>Mature_358_residues
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQIKQLIRQLNRYASMISGGND
NLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDDFDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLG
RSFSSNPEVTIRLAKQFVDVFSRYGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPFMVMTAHV
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEDALCLTINAGADMVIFANQLGTITPPEVID
VIEKLVIDKQIPYQRIDEAYRRIVRLKQQIICSELINT

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=286, Percent_Identity=31.1188811188811, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 39662; Mature: 39662

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQ
CEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHH
IKQLIRQLNRYASMISGGNDNLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDD
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCC
FDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLGRSFSSNPEVTIRLAKQFVDV
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEHHHHHHHHHH
FSRYGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPFMVMTAHV
HHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHHH
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEDALCLTINAG
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCEEEEEEECC
ADMVIFANQLGTITPPEVIDVIEKLVIDKQIPYQRIDEAYRRIVRLKQQIICSELINT
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDKDLSTGIYGKNLRNQAQ
CEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHH
IKQLIRQLNRYASMISGGNDNLPLFTAIDYEGGVVDRLSKIEGCPPTMKARELAKLSSDD
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCC
FDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLGRSFSSNPEVTIRLAKQFVDV
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEHHHHHHHHHH
FSRYGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDELIPYRSLLKDLSNPFMVMTAHV
HHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHHH
INKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISDDLQMHAISNHYSLEDALCLTINAG
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCEEEEEEECC
ADMVIFANQLGTITPPEVIDVIEKLVIDKQIPYQRIDEAYRRIVRLKQQIICSELINT
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]