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The map label for this gene is yrbD [C]

Identifier: 54296864

GI number: 54296864

Start: 1013788

End: 1014264

Strand: Direct

Name: yrbD [C]

Synonym: lpp0905

Alternate gene names: 54296864

Gene position: 1013788-1014264 (Clockwise)

Preceding gene: 54296863

Following gene: 54296865

Centisome position: 28.94

GC content: 39.2

Gene sequence:

>477_bases
ATGAAAAAGCAACGTTATGTAGACATTAGTGTAGGAATATTTATGTTGCTTGGGCTGCTAGCATTATTAGTAATGGCGAT
GAAAGTGAGTAACATTACTGATTTTATGTCTGATAAAACTTATCGTGTCACTGCAGATTTTACTGATATCGGTGGTTTAA
AAGTTCGAGCTCCAGTGACCGTTGCAGGTGTCCGTATTGGTGAGGTCAGTCGAATTGAGTTGCAGCCAGGTGAGCTCAAT
GCAAGAGTGACTATGACTTTGAATGGTGATAAAAAGATTCCTTATGAGGATGCTTCTGCACGAATTTTGACCGAAGGCTT
GCTTGGTTCGAATTATATTAGTATCGTTCCCGGTTTTGACGAGGACGGTGACACAGATCATCCCTATTTACGCGATGGGG
ATACCATTGCGAAGACTCAGGAAGCAATTATCCTTGAAAATCTTATAGGCCAATTATTATTTAATATAAAAAAATAG

Upstream 100 bases:

>100_bases
AGGCATTAGTCATGCTACAACTAAAACTGTAGTATACTCATCGCTTGCTGTATTAGGTCTTGATTTCTTGTTGACTGCAA
TGATGATTGGAGATTGGTAA

Downstream 100 bases:

>100_bases
GTGAACCATGAGAGTTTTTAAAACAATTTTATTAGTTGTGTTGATGACGTTGTCTCAAGCAATGGTTGCTCAGACCTCTC
CTATCCCTATGTTAGAACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKQRYVDISVGIFMLLGLLALLVMAMKVSNITDFMSDKTYRVTADFTDIGGLKVRAPVTVAGVRIGEVSRIELQPGELN
ARVTMTLNGDKKIPYEDASARILTEGLLGSNYISIVPGFDEDGDTDHPYLRDGDTIAKTQEAIILENLIGQLLFNIKK

Sequences:

>Translated_158_residues
MKKQRYVDISVGIFMLLGLLALLVMAMKVSNITDFMSDKTYRVTADFTDIGGLKVRAPVTVAGVRIGEVSRIELQPGELN
ARVTMTLNGDKKIPYEDASARILTEGLLGSNYISIVPGFDEDGDTDHPYLRDGDTIAKTQEAIILENLIGQLLFNIKK
>Mature_158_residues
MKKQRYVDISVGIFMLLGLLALLVMAMKVSNITDFMSDKTYRVTADFTDIGGLKVRAPVTVAGVRIGEVSRIELQPGELN
ARVTMTLNGDKKIPYEDASARILTEGLLGSNYISIVPGFDEDGDTDHPYLRDGDTIAKTQEAIILENLIGQLLFNIKK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=150, Percent_Identity=42, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17392; Mature: 17392

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQRYVDISVGIFMLLGLLALLVMAMKVSNITDFMSDKTYRVTADFTDIGGLKVRAPVT
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCEE
VAGVRIGEVSRIELQPGELNARVTMTLNGDKKIPYEDASARILTEGLLGSNYISIVPGFD
EEEEEECCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEECCCC
EDGDTDHPYLRDGDTIAKTQEAIILENLIGQLLFNIKK
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKQRYVDISVGIFMLLGLLALLVMAMKVSNITDFMSDKTYRVTADFTDIGGLKVRAPVT
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCEE
VAGVRIGEVSRIELQPGELNARVTMTLNGDKKIPYEDASARILTEGLLGSNYISIVPGFD
EEEEEECCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEECCCC
EDGDTDHPYLRDGDTIAKTQEAIILENLIGQLLFNIKK
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]