Click here to switch to the map view.

The map label for this gene is oxaA [H]

Identifier: 54027644

GI number: 54027644

Start: 6018551

End: 6019630

Strand: Reverse

Name: oxaA [H]

Synonym: nfa56700

Alternate gene names: 54027644

Gene position: 6019630-6018551 (Counterclockwise)

Preceding gene: 54027645

Following gene: 54027643

Centisome position: 99.97

GC content: 66.2

Gene sequence:

>1080_bases
GTGCTCGACTTCATCTATTGGCCGGTGTCCTGGATCTTGTGGTTCTGGCACCGGGTGTTCGGGTTCGCTTTCGGCGCGGA
CAACGGTCTCACGTGGGCGCTGGCGGTGGTGTTCCTCGTGTTCACCCTGCGCATCGTGCTCTACAAGCCGTTCGTCAAGC
AGGTGCGCACGACCAAACAGATGCAGGAACTGCAGCCCCAGATCAAGGAGCTGCAGAAGAAGTACAAGAACGACCGCCAG
AAGATGGCGCTGGAGATGCAGAAGCTCCAGAAGGAACACGGCTTCAACCCGCTCATGGGCTGCCTGCCGGTCCTGGCGCA
GGTGCCGGTGTTCCTCGGTCTGTTCCACGTGCTGCGTTCCTTCAACCGCACCGGCCACGGCTTCGGTCAGCTCGGCCTGA
CCCCGGAGCAGAACGCCAACACCGCCAACTACGTCTTCAACGCGGCCGACGTCCAGTCGTTCCTGAGCGCGCGTATCTTC
GGCGCGCCGATCTCCGCGTTCATCACCACGCCGCAGGCGGAGTTCCTGGCGTTCGAGGACTACGGCGGCATCCCCAGCCG
GTTGAGCATCGCGCTGGTCGCCATCCCGCTCATGGTGATCGCCGGCCTGGCGACCCACTTCAACGCCCGTGCCTCGGTCG
CGCGGCAGACCCCGGAGGCCGCGGCCAACCCGCAGGCCGCGCTGATGAACAAGCTCGCGCTGTGGGTGTTCCCGCTCGGC
GTGCTCGTCGGTGGCCCGTTCCTGCCGATCGCGATCCTGCTCTACTGGGTCTCGAACAACATCTGGACCTACGGGCAGCA
GCACCTCGTCTTCGGCCGCATGGCCAAGGAAGAAGAAGCCAAGAAGCAGGCCAAGCTCGAGCAACGGGCGCAGAACGCGC
CGAAGCCGGGCGCGAAGCCGGTCAACACGAAGAAGAAGCCGGCCACCGCCGCGTCCGCCGAATCCGCGGACGACACCGGC
CAGCCGACCGAGCCGTCGACCAACGGCACCCCGAAGCCCGCCAAGGCCGGGCAGCGGAAATCGGGTGGGCAGAAGCGCAA
CCCCAACCGGGGCAGGCCCAACCAGAAGCGCCGCCGCTGA

Upstream 100 bases:

>100_bases
GACGCGGCAGCCGCCGACGCCGCGATGTCGGCGCCACACGCTTGTAAAGGATCGCCGCACGCGGTGGTCGGCGACACGAA
CGACGGGAGTACATAGAGCC

Downstream 100 bases:

>100_bases
CCGCCACCGCCACCCGTGAGATTGAGGAAACCAGATGACTGTTGAAACCGACGGAGTGAACGCCGATGCCGACGACCTCG
TGAGCGATGCCGAGGAAGCG

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MLDFIYWPVSWILWFWHRVFGFAFGADNGLTWALAVVFLVFTLRIVLYKPFVKQVRTTKQMQELQPQIKELQKKYKNDRQ
KMALEMQKLQKEHGFNPLMGCLPVLAQVPVFLGLFHVLRSFNRTGHGFGQLGLTPEQNANTANYVFNAADVQSFLSARIF
GAPISAFITTPQAEFLAFEDYGGIPSRLSIALVAIPLMVIAGLATHFNARASVARQTPEAAANPQAALMNKLALWVFPLG
VLVGGPFLPIAILLYWVSNNIWTYGQQHLVFGRMAKEEEAKKQAKLEQRAQNAPKPGAKPVNTKKKPATAASAESADDTG
QPTEPSTNGTPKPAKAGQRKSGGQKRNPNRGRPNQKRRR

Sequences:

>Translated_359_residues
MLDFIYWPVSWILWFWHRVFGFAFGADNGLTWALAVVFLVFTLRIVLYKPFVKQVRTTKQMQELQPQIKELQKKYKNDRQ
KMALEMQKLQKEHGFNPLMGCLPVLAQVPVFLGLFHVLRSFNRTGHGFGQLGLTPEQNANTANYVFNAADVQSFLSARIF
GAPISAFITTPQAEFLAFEDYGGIPSRLSIALVAIPLMVIAGLATHFNARASVARQTPEAAANPQAALMNKLALWVFPLG
VLVGGPFLPIAILLYWVSNNIWTYGQQHLVFGRMAKEEEAKKQAKLEQRAQNAPKPGAKPVNTKKKPATAASAESADDTG
QPTEPSTNGTPKPAKAGQRKSGGQKRNPNRGRPNQKRRR
>Mature_359_residues
MLDFIYWPVSWILWFWHRVFGFAFGADNGLTWALAVVFLVFTLRIVLYKPFVKQVRTTKQMQELQPQIKELQKKYKNDRQ
KMALEMQKLQKEHGFNPLMGCLPVLAQVPVFLGLFHVLRSFNRTGHGFGQLGLTPEQNANTANYVFNAADVQSFLSARIF
GAPISAFITTPQAEFLAFEDYGGIPSRLSIALVAIPLMVIAGLATHFNARASVARQTPEAAANPQAALMNKLALWVFPLG
VLVGGPFLPIAILLYWVSNNIWTYGQQHLVFGRMAKEEEAKKQAKLEQRAQNAPKPGAKPVNTKKKPATAASAESADDTG
QPTEPSTNGTPKPAKAGQRKSGGQKRNPNRGRPNQKRRR

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=87, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 39938; Mature: 39938

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFIYWPVSWILWFWHRVFGFAFGADNGLTWALAVVFLVFTLRIVLYKPFVKQVRTTKQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQELQPQIKELQKKYKNDRQKMALEMQKLQKEHGFNPLMGCLPVLAQVPVFLGLFHVLRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FNRTGHGFGQLGLTPEQNANTANYVFNAADVQSFLSARIFGAPISAFITTPQAEFLAFED
HCCCCCCCCCCCCCCCCCCCCHHHEECHHHHHHHHHHHHHCCCHHHHHCCCCHHHEEECC
YGGIPSRLSIALVAIPLMVIAGLATHFNARASVARQTPEAAANPQAALMNKLALWVFPLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHH
VLVGGPFLPIAILLYWVSNNIWTYGQQHLVFGRMAKEEEAKKQAKLEQRAQNAPKPGAKP
HHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VNTKKKPATAASAESADDTGQPTEPSTNGTPKPAKAGQRKSGGQKRNPNRGRPNQKRRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MLDFIYWPVSWILWFWHRVFGFAFGADNGLTWALAVVFLVFTLRIVLYKPFVKQVRTTKQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQELQPQIKELQKKYKNDRQKMALEMQKLQKEHGFNPLMGCLPVLAQVPVFLGLFHVLRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FNRTGHGFGQLGLTPEQNANTANYVFNAADVQSFLSARIFGAPISAFITTPQAEFLAFED
HCCCCCCCCCCCCCCCCCCCCHHHEECHHHHHHHHHHHHHCCCHHHHHCCCCHHHEEECC
YGGIPSRLSIALVAIPLMVIAGLATHFNARASVARQTPEAAANPQAALMNKLALWVFPLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHH
VLVGGPFLPIAILLYWVSNNIWTYGQQHLVFGRMAKEEEAKKQAKLEQRAQNAPKPGAKP
HHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VNTKKKPATAASAESADDTGQPTEPSTNGTPKPAKAGQRKSGGQKRNPNRGRPNQKRRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA