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The map label for this gene is 54027515

Identifier: 54027515

GI number: 54027515

Start: 5871024

End: 5871533

Strand: Reverse

Name: 54027515

Synonym: nfa55410

Alternate gene names: NA

Gene position: 5871533-5871024 (Counterclockwise)

Preceding gene: 54027518

Following gene: 54027513

Centisome position: 97.51

GC content: 70.59

Gene sequence:

>510_bases
ATGATGTGCGTCATGGCAGCCGTGATGGAAGGACCGCTGGCCGATCTGTCGTCGTGGCGGACCGACGAGTGCTCGATCGC
CAAGGCGATGGACCTGGTCGGCACCCGATCGGCGATCCTGATCCTGCGCGAGGCCTACTACGGCACCCGCCGTTTCGACG
GTTTCGCCGCGCGCGTCGGTATCACCCCGGCGGCGGCCGCGGCCCAACTGCGCAAACTCACCGAGGCCGGGCTGCTCGCC
AAGCGCCCCTACCGCGAGGAGGGCAAGCGCACCCGGTACGAGTACGTGCTCACCCCGATGGGCCGTGACCTGCTGCCCGC
GGTGCTGGCGCTGATGCAGTGGGGCGATGCCTACCTGCAACCGGGGCCGCCGCCGCTGCGACTGGTCGACGCGGCGACCG
GCGACCCCGTGCGCGTGCAGGTGCGCAGCGCGAGCGGCCGGGAGATCGAACTCGACGAACTCGGCGTCCGGGTGAACGAG
GAGTACCTGCGCGCTCGCGGGAAGAAGTGA

Upstream 100 bases:

>100_bases
GGTTCCTTCCGAACCGCGAGCCGGGGCGCCGGTGCCCTGACTCTACTGACGTATAGTCAGGCTAACGCCTGGATATAGTC
GTCTCAAGTCAGAAGTCGGT

Downstream 100 bases:

>100_bases
GCCGGGACGTCCCGGCTCGGCTCAGTTGAGTCGGCGGCCGTCGTCGGCGCCGAAGAAATAGACGTGCTCGGGCGAGGTCG
ACAGGAACAGCCGCTCGCCC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MMCVMAAVMEGPLADLSSWRTDECSIAKAMDLVGTRSAILILREAYYGTRRFDGFAARVGITPAAAAAQLRKLTEAGLLA
KRPYREEGKRTRYEYVLTPMGRDLLPAVLALMQWGDAYLQPGPPPLRLVDAATGDPVRVQVRSASGREIELDELGVRVNE
EYLRARGKK

Sequences:

>Translated_169_residues
MMCVMAAVMEGPLADLSSWRTDECSIAKAMDLVGTRSAILILREAYYGTRRFDGFAARVGITPAAAAAQLRKLTEAGLLA
KRPYREEGKRTRYEYVLTPMGRDLLPAVLALMQWGDAYLQPGPPPLRLVDAATGDPVRVQVRSASGREIELDELGVRVNE
EYLRARGKK
>Mature_169_residues
MMCVMAAVMEGPLADLSSWRTDECSIAKAMDLVGTRSAILILREAYYGTRRFDGFAARVGITPAAAAAQLRKLTEAGLLA
KRPYREEGKRTRYEYVLTPMGRDLLPAVLALMQWGDAYLQPGPPPLRLVDAATGDPVRVQVRSASGREIELDELGVRVNE
EYLRARGKK

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 18655; Mature: 18655

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCVMAAVMEGPLADLSSWRTDECSIAKAMDLVGTRSAILILREAYYGTRRFDGFAARVG
CHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECC
ITPAAAAAQLRKLTEAGLLAKRPYREEGKRTRYEYVLTPMGRDLLPAVLALMQWGDAYLQ
CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCC
PGPPPLRLVDAATGDPVRVQVRSASGREIELDELGVRVNEEYLRARGKK
CCCCCEEEEECCCCCCEEEEEECCCCCEEEHHHHCCEECHHHHHCCCCC
>Mature Secondary Structure
MMCVMAAVMEGPLADLSSWRTDECSIAKAMDLVGTRSAILILREAYYGTRRFDGFAARVG
CHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECC
ITPAAAAAQLRKLTEAGLLAKRPYREEGKRTRYEYVLTPMGRDLLPAVLALMQWGDAYLQ
CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCC
PGPPPLRLVDAATGDPVRVQVRSASGREIELDELGVRVNEEYLRARGKK
CCCCCEEEEECCCCCCEEEEEECCCCCEEEHHHHCCEECHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]