| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54027504
Identifier: 54027504
GI number: 54027504
Start: 5857362
End: 5859416
Strand: Reverse
Name: 54027504
Synonym: nfa55300
Alternate gene names: NA
Gene position: 5859416-5857362 (Counterclockwise)
Preceding gene: 54027505
Following gene: 54027500
Centisome position: 97.31
GC content: 69.59
Gene sequence:
>2055_bases GTGACCCCGAAGCCTCTCGCCCTCTTCGTCGCCCACGACGGCCGCTCGTCCCGCTCCGCGGTGACCTGCGAATACAAGTG CGCCAACGCCTGCTTCCACGAGGCGCCCAACACCTCCGGTGGTGAGTACTTCGGCGACATCGTCAGCTCCCTCAACCGGC GCGGCCTGCTCAAGGGCGGTGCGGCGGCGGTGCTGGCGGTCGGCGCGGCCGGCGTGCTCGCGGCCTGCGGCGACGACGAG CCCGCGCCGGCGGCGTCGGCGGGTGATCCGGGCACCGGCACCGATTTCACCGCGGTCACCCCCAACACCGAGGACGCGGT GGTCATCCCCGAGGGCTACGAGCAACAGGTGGTGATCCGCTGGGGCGACCCGATCTTCCCGGACGCCCCCGCCTTCGACT TCGAGAACCAGACCGCGGCCGCGCAGGCCCGACAGTTCGGTTACAACAACGACTTCGCCGCTCTGCTGCCCGTCGAGGGC CAGGCCAACCGGTACCTGCTGGTGGTCAACCACGAGTACACCACCGGCCCGCAGATGTTCCGCGGCTACGACAAGAACGC GCCGACCGACGAGCAGATCGCGATCACGCTGGCCGCGCACGGTCTGTCGGTGGTGGAGGTCGAGGGCGAATCCGGTTCGG GCAAGCTGAAGCCCGTCTTCGGCAAGTACAACCGCCGCATCACCGCGACCACCGAATTCACCCTCACCGGTCCGGCCGCG GGCAGCGACCTGGTCAAGACCTCCGCCGACCCGACCGGCACCAAGGTGGCAGGCACCTTCGCCAACTGCGCGGGCGGCGT GACGCCCTGGGGCACCGTGCTCTCCGGCGAGGAGAACTTCCACGGCTATTTCGCCAACGGCGACAAGGTCACCGAGCCCA CCGCGGCCGCCCGCCTGAAGCGCTACGGCTTCGCCGAGGGCGCCACCGCCAACCACTGGGAGCGCGCCGACAAGCGCTTC GATCTGGCGCAGGAACCCAACGAGGCCAACCGATTCGGCTACGTCGTCGAGGTCGACCCGTGGGACCCGGCGTCGACACC GGTCAAGCACACCGCGCTGGGCAGGCTCAAGCACGAGGGCGCCACCATCCACGTGACCGCCGACGGTTCCGTGGTCTCCT ACACCGGCGACGACGAGCGCTTCGACTACATGTACAAGTTCGTGTCGTCGCGCAAGATCCAGCCGGGCACGGGCGCCGCG AGCAGGCGCGCGAACATGACCATCCTCACCGCGGGCACCCTCTACGTCGCCAAGCTCACCGGCGACCACGCGGACAAGAT CGACGGCTCCGGCACGCTGCCCTCGGACAAGGGCTTCACCGGCACGGGCCGGTGGATTCCGCTGCTCGAATCCGACGGTG ACGGTAAGGGCCGCTCGCTGGTGGAGGGCATGACCGCCGAGGAGGTGGCGGTGTTCACCCGCCTGGCCGCCGACAAGGTG GGCGCCACCAAGATGGACCGCCCCGAGGATTTCGAGGCCAACCCGGTGACCGGCAAGGTGTACGTCGCCTTGACCAACAA CGACAACCGCGGCAAGGAGGGCAAGGCCGCCGCCGACGAGGCCAACCCGCGCAACCTCAACAAGAACGGCCAGGTCCTCG AGATCGACGACGACCACACCGGCACCGAGTTCACCTGGTCGCTGCTGCTGGTCTGCGGTGATCCCAAGGCTGCCGACACC TACTACGCCGGTTTCGACAAGGACAAGGTCAGCCCGATCTCCTGCCCGGACAACCTGGCCTTCGACCAGTACGGCAACCT GTGGATCTCCACCGACGGCAACGCGCTGAAGTCCAACGACGGCCTGTTCTCGGTGGTGCTCGAGGGGGCCGCCCGCGGCG AGACCAAGCAGTTCCTCACCGTGCCGCGCGGGGCGGAGACCTGCGGGCCGATCGTCACCGAGTCGCGGGTGCTGGTCTGC GTGCAGCATCCCGGCGAGGAGGACGACGCGACCCCGGACAACCCCGCCTCGCACTGGCCCGACGGCGGCAGCGCGCAGCC ACGGCCCTCGGTGGTCGCGGTGTGGCGTGCCGGTGGCGGGCGGATCGGCGTCTGA
Upstream 100 bases:
>100_bases GCCGCCGTCAGCTGTGTTCGGTGTGCCGGAGCGGGCGGCCCGCGTGACGCGGTGCCGTCATCACCGGCCACCGGACCGCT CAGCCCAGTCAGGAGTGATC
Downstream 100 bases:
>100_bases CCCGGCGGGTCAGCTGCTGCCGAACAGTCCGCCCATGTTGGCGTAGCGGGCGAAATCGCCCTGGGCGCCGCTGTAGACGT TGAGGTCGGTCGGGCCCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphatase; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Twin-Arginine Translocation Pathway Signal Protein; UxpB Protein; DTDP-Glucose 4 6-Dehydratase; Twin Arginine Translocation Pathway Signal Protein; Phosphatase-Like Protein; DTDP-D-Glucose 4 6-Dehydratase; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Alkaline Phosphatase Family Protein; Exported Protein
Number of amino acids: Translated: 684; Mature: 683
Protein sequence:
>684_residues MTPKPLALFVAHDGRSSRSAVTCEYKCANACFHEAPNTSGGEYFGDIVSSLNRRGLLKGGAAAVLAVGAAGVLAACGDDE PAPAASAGDPGTGTDFTAVTPNTEDAVVIPEGYEQQVVIRWGDPIFPDAPAFDFENQTAAAQARQFGYNNDFAALLPVEG QANRYLLVVNHEYTTGPQMFRGYDKNAPTDEQIAITLAAHGLSVVEVEGESGSGKLKPVFGKYNRRITATTEFTLTGPAA GSDLVKTSADPTGTKVAGTFANCAGGVTPWGTVLSGEENFHGYFANGDKVTEPTAAARLKRYGFAEGATANHWERADKRF DLAQEPNEANRFGYVVEVDPWDPASTPVKHTALGRLKHEGATIHVTADGSVVSYTGDDERFDYMYKFVSSRKIQPGTGAA SRRANMTILTAGTLYVAKLTGDHADKIDGSGTLPSDKGFTGTGRWIPLLESDGDGKGRSLVEGMTAEEVAVFTRLAADKV GATKMDRPEDFEANPVTGKVYVALTNNDNRGKEGKAAADEANPRNLNKNGQVLEIDDDHTGTEFTWSLLLVCGDPKAADT YYAGFDKDKVSPISCPDNLAFDQYGNLWISTDGNALKSNDGLFSVVLEGAARGETKQFLTVPRGAETCGPIVTESRVLVC VQHPGEEDDATPDNPASHWPDGGSAQPRPSVVAVWRAGGGRIGV
Sequences:
>Translated_684_residues MTPKPLALFVAHDGRSSRSAVTCEYKCANACFHEAPNTSGGEYFGDIVSSLNRRGLLKGGAAAVLAVGAAGVLAACGDDE PAPAASAGDPGTGTDFTAVTPNTEDAVVIPEGYEQQVVIRWGDPIFPDAPAFDFENQTAAAQARQFGYNNDFAALLPVEG QANRYLLVVNHEYTTGPQMFRGYDKNAPTDEQIAITLAAHGLSVVEVEGESGSGKLKPVFGKYNRRITATTEFTLTGPAA GSDLVKTSADPTGTKVAGTFANCAGGVTPWGTVLSGEENFHGYFANGDKVTEPTAAARLKRYGFAEGATANHWERADKRF DLAQEPNEANRFGYVVEVDPWDPASTPVKHTALGRLKHEGATIHVTADGSVVSYTGDDERFDYMYKFVSSRKIQPGTGAA SRRANMTILTAGTLYVAKLTGDHADKIDGSGTLPSDKGFTGTGRWIPLLESDGDGKGRSLVEGMTAEEVAVFTRLAADKV GATKMDRPEDFEANPVTGKVYVALTNNDNRGKEGKAAADEANPRNLNKNGQVLEIDDDHTGTEFTWSLLLVCGDPKAADT YYAGFDKDKVSPISCPDNLAFDQYGNLWISTDGNALKSNDGLFSVVLEGAARGETKQFLTVPRGAETCGPIVTESRVLVC VQHPGEEDDATPDNPASHWPDGGSAQPRPSVVAVWRAGGGRIGV >Mature_683_residues TPKPLALFVAHDGRSSRSAVTCEYKCANACFHEAPNTSGGEYFGDIVSSLNRRGLLKGGAAAVLAVGAAGVLAACGDDEP APAASAGDPGTGTDFTAVTPNTEDAVVIPEGYEQQVVIRWGDPIFPDAPAFDFENQTAAAQARQFGYNNDFAALLPVEGQ ANRYLLVVNHEYTTGPQMFRGYDKNAPTDEQIAITLAAHGLSVVEVEGESGSGKLKPVFGKYNRRITATTEFTLTGPAAG SDLVKTSADPTGTKVAGTFANCAGGVTPWGTVLSGEENFHGYFANGDKVTEPTAAARLKRYGFAEGATANHWERADKRFD LAQEPNEANRFGYVVEVDPWDPASTPVKHTALGRLKHEGATIHVTADGSVVSYTGDDERFDYMYKFVSSRKIQPGTGAAS RRANMTILTAGTLYVAKLTGDHADKIDGSGTLPSDKGFTGTGRWIPLLESDGDGKGRSLVEGMTAEEVAVFTRLAADKVG ATKMDRPEDFEANPVTGKVYVALTNNDNRGKEGKAAADEANPRNLNKNGQVLEIDDDHTGTEFTWSLLLVCGDPKAADTY YAGFDKDKVSPISCPDNLAFDQYGNLWISTDGNALKSNDGLFSVVLEGAARGETKQFLTVPRGAETCGPIVTESRVLVCV QHPGEEDDATPDNPASHWPDGGSAQPRPSVVAVWRAGGGRIGV
Specific function: Unknown
COG id: COG3211
COG function: function code R; Predicted phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72449; Mature: 72317
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPKPLALFVAHDGRSSRSAVTCEYKCANACFHEAPNTSGGEYFGDIVSSLNRRGLLKGG CCCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC AAAVLAVGAAGVLAACGDDEPAPAASAGDPGTGTDFTAVTPNTEDAVVIPEGYEQQVVIR CEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCEEEEEE WGDPIFPDAPAFDFENQTAAAQARQFGYNNDFAALLPVEGQANRYLLVVNHEYTTGPQMF ECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHH RGYDKNAPTDEQIAITLAAHGLSVVEVEGESGSGKLKPVFGKYNRRITATTEFTLTGPAA HCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCEEEECCCCCCEEEEEEEEEEECCCC GSDLVKTSADPTGTKVAGTFANCAGGVTPWGTVLSGEENFHGYFANGDKVTEPTAAARLK CCCHHCCCCCCCCCEEEEEHHHHCCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHHHHH RYGFAEGATANHWERADKRFDLAQEPNEANRFGYVVEVDPWDPASTPVKHTALGRLKHEG HCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHCCCC ATIHVTADGSVVSYTGDDERFDYMYKFVSSRKIQPGTGAASRRANMTILTAGTLYVAKLT CEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECEEEEEEEC GDHADKIDGSGTLPSDKGFTGTGRWIPLLESDGDGKGRSLVEGMTAEEVAVFTRLAADKV CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHC GATKMDRPEDFEANPVTGKVYVALTNNDNRGKEGKAAADEANPRNLNKNGQVLEIDDDHT CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC GTEFTWSLLLVCGDPKAADTYYAGFDKDKVSPISCPDNLAFDQYGNLWISTDGNALKSND CCEEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCEEECCC GLFSVVLEGAARGETKQFLTVPRGAETCGPIVTESRVLVCVQHPGEEDDATPDNPASHWP CEEEEEEECCCCCCCCEEEECCCCCCCCCCCEECCEEEEEEECCCCCCCCCCCCCCCCCC DGGSAQPRPSVVAVWRAGGGRIGV CCCCCCCCCCEEEEEECCCCCCCC >Mature Secondary Structure TPKPLALFVAHDGRSSRSAVTCEYKCANACFHEAPNTSGGEYFGDIVSSLNRRGLLKGG CCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC AAAVLAVGAAGVLAACGDDEPAPAASAGDPGTGTDFTAVTPNTEDAVVIPEGYEQQVVIR CEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCEEEEEE WGDPIFPDAPAFDFENQTAAAQARQFGYNNDFAALLPVEGQANRYLLVVNHEYTTGPQMF ECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHH RGYDKNAPTDEQIAITLAAHGLSVVEVEGESGSGKLKPVFGKYNRRITATTEFTLTGPAA HCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCEEEECCCCCCEEEEEEEEEEECCCC GSDLVKTSADPTGTKVAGTFANCAGGVTPWGTVLSGEENFHGYFANGDKVTEPTAAARLK CCCHHCCCCCCCCCEEEEEHHHHCCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHHHHH RYGFAEGATANHWERADKRFDLAQEPNEANRFGYVVEVDPWDPASTPVKHTALGRLKHEG HCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHCCCC ATIHVTADGSVVSYTGDDERFDYMYKFVSSRKIQPGTGAASRRANMTILTAGTLYVAKLT CEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECEEEEEEEC GDHADKIDGSGTLPSDKGFTGTGRWIPLLESDGDGKGRSLVEGMTAEEVAVFTRLAADKV CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHC GATKMDRPEDFEANPVTGKVYVALTNNDNRGKEGKAAADEANPRNLNKNGQVLEIDDDHT CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC GTEFTWSLLLVCGDPKAADTYYAGFDKDKVSPISCPDNLAFDQYGNLWISTDGNALKSND CCEEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCEEECCC GLFSVVLEGAARGETKQFLTVPRGAETCGPIVTESRVLVCVQHPGEEDDATPDNPASHWP CEEEEEEECCCCCCCCEEEECCCCCCCCCCCEECCEEEEEEECCCCCCCCCCCCCCCCCC DGGSAQPRPSVVAVWRAGGGRIGV CCCCCCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA