| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54027471
Identifier: 54027471
GI number: 54027471
Start: 5827026
End: 5828714
Strand: Reverse
Name: 54027471
Synonym: nfa54970
Alternate gene names: NA
Gene position: 5828714-5827026 (Counterclockwise)
Preceding gene: 54027474
Following gene: 54027467
Centisome position: 96.8
GC content: 71.4
Gene sequence:
>1689_bases GTGGGCGACATGGATGTGTGGGGATCCCGCCGCTTTCGCGTCCGGGGCGCATTGGCACTCGCGGGGGTGGCGGCTGTGGT GCTGGCCTCGGGTGCGTGCGGGGTCCGCGCGGAAGCGACTGAGCCCGAAGCGCTCGTCGACCGTTTCACCGAACTGCTCG ACGAGCAGGACTACCGCAAGGCCGCGGAACTCACCTCCTACCCGAACGCGGCGTCGGCAACGATGCAGCAAATGTTCGAG GGATTGCAGCCGGGCACCGTCGACTACGAGAAGACGCAATTCATCGGCCTGGATTCCGAGTCCGCCATTTTCAGCATGGA CGTCGACTGGAACTTCGGCGAGAGCAAGAACTGGGGCTACAGCCTGCAGGGCACCGTCCGCAAGCTGGCGATCGGCTGGC GGATCTCCTGGGAGCCCGCCCTGGTGCTGCCGGAACTCCAGGGCAACCGCACGGTGAAGCTGGTGCGCACGATGCCCTCC CCGCCGCCGCGGGTGGTCGACATCGTCGGCGAGCCGCTGATGCACGAGCAGATCATCAACGTGATCAAGCTCGACCCGGC GAAGATGCCCGATCCGGTCGCGTCCACCAACGCGCTGGCCGAGGCGATCGAGCCGGTCGCCCCGCTGATCACCGGGCCGA GCCTGATGCAGCAGCTCGCCGCCGCACAGGGCAAGCCGATCGTCGCGGTGAACCTGCGCGAGGGCGACTTCGCGATCCTC GAGCCGCAGATGGCCCCCATCCCCGGCGTGGTGATGGAGAAGCAGCCGCGGCTGATCTCCTCCGACCGCCGGGTCTGGTC GCCGATGCTCGACGCACTGCGCAAGGTGTGGCAGGACAGTCAGGACCAGCACGCGGGCTGGGGCGTCCAGGTGTTCGAGC CGGACGGCCGGTTCATCCGGCAGGTCGCCGGCCACCAGGGCCCGCCCGGACCCGACATCGCCGCGACGATGGATCAGCGG CTACAGCGCGCCGCCGAGGACGCGGTCGTCAGCGTCGGCACGCCCGCCTCCATCGTGGCGATCCAGCCGTCCAGCGGCGC GGTCGTCGCGGTCGCGCAGAACAGCCAGGCCAGCGAGCACGGGCCGGTCGCGTTCACCGGGCTCTACCCCGTCGGTGGCG CGGTCGAGCTGCTGCGCTCGGTGGCGGCGCTGGACAAGAACAAGGCGCCCCAGGACGTCACCGTGCAGGAGGCCGCCGAG GCCGCGGGCAGGCTCGGCATCGGGGTCGACTTCCAGGTGCCGGGTCTGGACGAGGTGACCGGGCGGCTCGCCATCGGCGG TCGCGGTGCCGAACAGGTCCGCCAGGGCGGAGCCACCGACGCGGTGCTGGCCAGCCCGTTCGGCATGGCCATCGCGGCCG CGGCCATCGCGCGCGGCGAGGTGCCCGCACCCGCCATCGAGCGCGACCGGCCGGGCAGCACGGACGCTCAGCTCACGCCG CTGGGCGGACCGGTGACCGACCGGTTGCGCACCATGTTGCAGGAGGCGATGGCGAGCCCCGAGCTGGCGCCGCTGCGCCC CTACCCGGTCATCGCCTACGCCGCCACCGCGGGGTCGGACGGCTGGCTCGTCGCCAACATGGGTGATCTGGCCTTCGCGA TCCACATCGACGAGGCCGACAGCGCCAACGCCACCGCCCGGATGGCCGCGCGCATGCTCCAGTCCCTGGCCCAGCCCGAG ACCCCCTGA
Upstream 100 bases:
>100_bases TTGGGTAGCTGAGCATGGGTAACGCCCCGGTCACCGGGGCGTCGCGGGCAGATCCTTTTCAGGTACGGTGGTCTTGTTGC TGGAGTGACAAGAGTGAAGA
Downstream 100 bases:
>100_bases GCGGTGGTCAGGTGAGTGCCGAGACGGCCGCTCGCCAGCCGATCAGGAACAGGGCGAGCACGGTGCCCGCCACCAGGACG AAGCTCGGCGCCGTGCCCTG
Product: putative penicillin-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 562; Mature: 561
Protein sequence:
>562_residues MGDMDVWGSRRFRVRGALALAGVAAVVLASGACGVRAEATEPEALVDRFTELLDEQDYRKAAELTSYPNAASATMQQMFE GLQPGTVDYEKTQFIGLDSESAIFSMDVDWNFGESKNWGYSLQGTVRKLAIGWRISWEPALVLPELQGNRTVKLVRTMPS PPPRVVDIVGEPLMHEQIINVIKLDPAKMPDPVASTNALAEAIEPVAPLITGPSLMQQLAAAQGKPIVAVNLREGDFAIL EPQMAPIPGVVMEKQPRLISSDRRVWSPMLDALRKVWQDSQDQHAGWGVQVFEPDGRFIRQVAGHQGPPGPDIAATMDQR LQRAAEDAVVSVGTPASIVAIQPSSGAVVAVAQNSQASEHGPVAFTGLYPVGGAVELLRSVAALDKNKAPQDVTVQEAAE AAGRLGIGVDFQVPGLDEVTGRLAIGGRGAEQVRQGGATDAVLASPFGMAIAAAAIARGEVPAPAIERDRPGSTDAQLTP LGGPVTDRLRTMLQEAMASPELAPLRPYPVIAYAATAGSDGWLVANMGDLAFAIHIDEADSANATARMAARMLQSLAQPE TP
Sequences:
>Translated_562_residues MGDMDVWGSRRFRVRGALALAGVAAVVLASGACGVRAEATEPEALVDRFTELLDEQDYRKAAELTSYPNAASATMQQMFE GLQPGTVDYEKTQFIGLDSESAIFSMDVDWNFGESKNWGYSLQGTVRKLAIGWRISWEPALVLPELQGNRTVKLVRTMPS PPPRVVDIVGEPLMHEQIINVIKLDPAKMPDPVASTNALAEAIEPVAPLITGPSLMQQLAAAQGKPIVAVNLREGDFAIL EPQMAPIPGVVMEKQPRLISSDRRVWSPMLDALRKVWQDSQDQHAGWGVQVFEPDGRFIRQVAGHQGPPGPDIAATMDQR LQRAAEDAVVSVGTPASIVAIQPSSGAVVAVAQNSQASEHGPVAFTGLYPVGGAVELLRSVAALDKNKAPQDVTVQEAAE AAGRLGIGVDFQVPGLDEVTGRLAIGGRGAEQVRQGGATDAVLASPFGMAIAAAAIARGEVPAPAIERDRPGSTDAQLTP LGGPVTDRLRTMLQEAMASPELAPLRPYPVIAYAATAGSDGWLVANMGDLAFAIHIDEADSANATARMAARMLQSLAQPE TP >Mature_561_residues GDMDVWGSRRFRVRGALALAGVAAVVLASGACGVRAEATEPEALVDRFTELLDEQDYRKAAELTSYPNAASATMQQMFEG LQPGTVDYEKTQFIGLDSESAIFSMDVDWNFGESKNWGYSLQGTVRKLAIGWRISWEPALVLPELQGNRTVKLVRTMPSP PPRVVDIVGEPLMHEQIINVIKLDPAKMPDPVASTNALAEAIEPVAPLITGPSLMQQLAAAQGKPIVAVNLREGDFAILE PQMAPIPGVVMEKQPRLISSDRRVWSPMLDALRKVWQDSQDQHAGWGVQVFEPDGRFIRQVAGHQGPPGPDIAATMDQRL QRAAEDAVVSVGTPASIVAIQPSSGAVVAVAQNSQASEHGPVAFTGLYPVGGAVELLRSVAALDKNKAPQDVTVQEAAEA AGRLGIGVDFQVPGLDEVTGRLAIGGRGAEQVRQGGATDAVLASPFGMAIAAAAIARGEVPAPAIERDRPGSTDAQLTPL GGPVTDRLRTMLQEAMASPELAPLRPYPVIAYAATAGSDGWLVANMGDLAFAIHIDEADSANATARMAARMLQSLAQPET P
Specific function: Unknown
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59491; Mature: 59360
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDMDVWGSRRFRVRGALALAGVAAVVLASGACGVRAEATEPEALVDRFTELLDEQDYRK CCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHH AAELTSYPNAASATMQQMFEGLQPGTVDYEKTQFIGLDSESAIFSMDVDWNFGESKNWGY HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCE SLQGTVRKLAIGWRISWEPALVLPELQGNRTVKLVRTMPSPPPRVVDIVGEPLMHEQIIN ECCCHHEEEEEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHH VIKLDPAKMPDPVASTNALAEAIEPVAPLITGPSLMQQLAAAQGKPIVAVNLREGDFAIL HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEE EPQMAPIPGVVMEKQPRLISSDRRVWSPMLDALRKVWQDSQDQHAGWGVQVFEPDGRFIR CCCCCCCCCHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHH QVAGHQGPPGPDIAATMDQRLQRAAEDAVVSVGTPASIVAIQPSSGAVVAVAQNSQASEH HHHCCCCCCCCCHHHHHHHHHHHHHHHCEEECCCCCEEEEEECCCCCEEEEECCCCCCCC GPVAFTGLYPVGGAVELLRSVAALDKNKAPQDVTVQEAAEAAGRLGIGVDFQVPGLDEVT CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHC GRLAIGGRGAEQVRQGGATDAVLASPFGMAIAAAAIARGEVPAPAIERDRPGSTDAQLTP CEEEECCCCHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEC LGGPVTDRLRTMLQEAMASPELAPLRPYPVIAYAATAGSDGWLVANMGDLAFAIHIDEAD CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCEEEEEEECCCC SANATARMAARMLQSLAQPETP CCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure GDMDVWGSRRFRVRGALALAGVAAVVLASGACGVRAEATEPEALVDRFTELLDEQDYRK CCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHH AAELTSYPNAASATMQQMFEGLQPGTVDYEKTQFIGLDSESAIFSMDVDWNFGESKNWGY HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCE SLQGTVRKLAIGWRISWEPALVLPELQGNRTVKLVRTMPSPPPRVVDIVGEPLMHEQIIN ECCCHHEEEEEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHH VIKLDPAKMPDPVASTNALAEAIEPVAPLITGPSLMQQLAAAQGKPIVAVNLREGDFAIL HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEE EPQMAPIPGVVMEKQPRLISSDRRVWSPMLDALRKVWQDSQDQHAGWGVQVFEPDGRFIR CCCCCCCCCHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHH QVAGHQGPPGPDIAATMDQRLQRAAEDAVVSVGTPASIVAIQPSSGAVVAVAQNSQASEH HHHCCCCCCCCCHHHHHHHHHHHHHHHCEEECCCCCEEEEEECCCCCEEEEECCCCCCCC GPVAFTGLYPVGGAVELLRSVAALDKNKAPQDVTVQEAAEAAGRLGIGVDFQVPGLDEVT CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHC GRLAIGGRGAEQVRQGGATDAVLASPFGMAIAAAAIARGEVPAPAIERDRPGSTDAQLTP CEEEECCCCHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEC LGGPVTDRLRTMLQEAMASPELAPLRPYPVIAYAATAGSDGWLVANMGDLAFAIHIDEAD CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCEEEEEEECCCC SANATARMAARMLQSLAQPETP CCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA