Click here to switch to the map view.

The map label for this gene is 54027461

Identifier: 54027461

GI number: 54027461

Start: 5815448

End: 5817958

Strand: Reverse

Name: 54027461

Synonym: nfa54870

Alternate gene names: NA

Gene position: 5817958-5815448 (Counterclockwise)

Preceding gene: 54027462

Following gene: 54027456

Centisome position: 96.62

GC content: 75.87

Gene sequence:

>2511_bases
ATGTCCGGGCCCGCCGGGCGATCGACCATGAGTGCCATGACTGGTTCGATCGACCCGGCGCTGGTCTCCCGCCTCTCCGG
TGAGTTCACCGCGCTGGGAACACGGATGGGCGCCCTCGGGCGCGACTTGGAAGTTCTGCACCGGCAGGTGCTGGCCGGCG
CGCCCGCGGCGGGCTCGTCGTCGGGCGGTGCCACCCGCGTGGTCGGGGACGGACCGCCGCCGGGATCGCCTACGGCCGGG
GGCCGAGATGCGTCGACCGGGCCTGCCGCACCGGTTCCGGCGCCGCCCTCGGTCGCGCACCCCACGGCGCCGCCGACCGT
TCCGGGGACGGGGAGCACGCCCGAGGGGTGGTCCTCGAGCGCGGTCGAGCCGGGTGGGTCGCCGTCGACCGGCTCGGTCG
ACGCGGCGATGACGCCGGATTCCTCGGAGGACGGGACCGCGTCGCCGTCCGGTTGGGCCGAGCAGGGCGCCGTGCCGCCG
AGGGATGCTGCCCAGCGCGGGGTGGTGCCGCCGTCCGGCCGGGCCGAGCAGGGCGCGGTGCCGCCGAGGGAAGCGATGGG
GCCCGGGGCGGTGCCACGGCCGGGTTGGGGCGTGCCCACCGCGGTGCCGCCGGTGGGCCCGGCCGGTCACTGGTCCGTGC
CGCCGCCGGGTTGGGCCGGGCCGGGTGCGGTGCCGCGGCGGGCTCCGCGTGCGGGGAGCGGCGCGCCGCCCAGGGGCACC
GCCGCGGCGTGGATGCCGAAGGGCGCCGGTGCGCCCGGCGACCCGGTGCCGTCGGCGGGCGGTGCCGGCGGGCGCGCGGT
CGCGACGGGGTCCGGTCGCGGTGGGCGCGGGATACCACCGGTGCGGGCCGGGGTGATCGGCGACGGCACGCCGTGGTGGC
AGCGGGACGGTGTGATCAGCCGGATCCTGGCGGTGGCCGGGGTGGCGGTGACCCTGATCGGTGTGGTGATGCTGCTGGTG
CTGGCGGCCCAGGCCGGGCTGTTCGGTCCGGTGCCGAGAGTGGTGGCCGGAGCGGTGTTCTCGGCCGCGCTGGTGGGTGC
CGGTGTCCGCGTCTTCGGGCGGGCCGGTGGCCGGGTCGGCGGCATCGCGTTGGCGGCGACGGGTATCGCGGGCGCCTATC
TGGACGTGGTCGCGGTGACGGCGATCTACGACTGGCTGCATCCGGTGCCCGGATTCGCGGTGGCGTTCGCGGTGGCCGCG
TGCGGCGTGGCGCTGGCGGTGCGGTGGCAGTCGCAGCCGTTGGCGGTACTCGTGGTCGCGGGCGCGGCGCTCGCGGCACC
GTTCGTGACGGTGCAGCCGGTGCTGCTGGTGTTCCTGATCGCGTTGCAGGCGGCCTGCCTGCCGGTGCACCTCCAGCGGG
ACTGGCCGTTCCTGCACGTGATGCGCACGTCGCCCGCGGTGGTCGCGATCACCGTGTTCGTCGCGGTGGAGGTGATCTCG
TCGCAGAGCGGTCGTGGCGGCGCCCTGATCGCCGCCGCGGTGGCCGTGGCGGTGATCGGCTCGGTCGGCACGCTCGTGGT
GGTCCGCGCCCGGCCCGCCGACCTCACGGCGAGCCTGGCGCTGGCCGCCGCCGCGACACCGCTGTTGATCACCGTGCCCG
CCCTGCTCGAACGCCGCACCGCGGTGCCCGCCGCCCTCGCCTACGCGGCGGTGTTGCTGGCGGTGGCGTTCGGCTATCTG
CTGCCGAGAGTGCGTGCTGCCGTGCGCATCCCGAATCACACCGCGGTCGTCGCGGCCGTCGCCGGTGCGCTGGCGCTGCT
GGAAGCCTGTGTGGCCGGGACGGATTCGGCGACCCTGCCGATCGCGCTGTTCCTGGTGGGGCTGGGCTTCCTCGGGGTCG
CCGGGCAACAGCGGTCGCGGGTCGCGGTGGTCATCGGCGCCGCGTTCGGTGTGCTGGGCGGGCTGGCCCTGCTCGCCGAC
GCGTCGCCGGAAACGCTTGCCTCGCAGCACTTCGCACAGCAACGGTTGGGAACGGCGAGCGCACTGGCCGCCGTCGCCGG
ACTCGGCGTTCTGGCCCTGCTCGTGTGGAGTCTGCGCCGCATCGCGGGCGAGCGCCGCGGTGAGGACGAGGTGGTCGGGG
TGGGGGCGAGTGTGGCGGCGCTCTACCTGGTGACCGTCGCGGCGGTGTCGATCGGCGTCGCGGCGGGCGGCCGCGACGGT
TTCGTCGCCGGGCACAGCGTCGCGACGATCCTGTGGATGGGCGCCGCGACCGCCGCGCTGCTGTACGGCTTGCGCAAGCT
GGCGACCTCCGGTGCGGTGGCGAAGGTGGCGCTCGGGTCCGGCCTGCTGCTCACCGGCGCCGCGCTGGCCAAGCTGTTCC
TGTTCGATCTGGCCACCCTCGATGGTTTCGTCCGGGTGGGCGCCTTCCTCGCCGTCGGCGTGCTGCTGCTGCTCACCGGC
ACCCGCTACGCCCGCGCCTTCGCCGAGGCGGGCGAACGTGCGAGCACCGCGGCACCGGAGAATCCCGCGGGCGGACCTAC
TCCTCGTCCTGGCGACGAAGCAGTTCGTTGA

Upstream 100 bases:

>100_bases
GATCGAGGCCGTGCACCGGGTGACCTCGCTGCCCGCGGCCTCCCGCTGAGCGGCGGCCTCCCCGGGTAGATGTCCCGCAC
CCGCCCGGGTGTTTCTACTC

Downstream 100 bases:

>100_bases
CGCTCACCGACCGGCCGTCACCACTGTGGTGGCGGCCTTCGTCGCCGCCGGCGCTCCGGCGGCGCGAGGACCGCAACTCG
GCCATCCAGTTCTCGATGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 836; Mature: 835

Protein sequence:

>836_residues
MSGPAGRSTMSAMTGSIDPALVSRLSGEFTALGTRMGALGRDLEVLHRQVLAGAPAAGSSSGGATRVVGDGPPPGSPTAG
GRDASTGPAAPVPAPPSVAHPTAPPTVPGTGSTPEGWSSSAVEPGGSPSTGSVDAAMTPDSSEDGTASPSGWAEQGAVPP
RDAAQRGVVPPSGRAEQGAVPPREAMGPGAVPRPGWGVPTAVPPVGPAGHWSVPPPGWAGPGAVPRRAPRAGSGAPPRGT
AAAWMPKGAGAPGDPVPSAGGAGGRAVATGSGRGGRGIPPVRAGVIGDGTPWWQRDGVISRILAVAGVAVTLIGVVMLLV
LAAQAGLFGPVPRVVAGAVFSAALVGAGVRVFGRAGGRVGGIALAATGIAGAYLDVVAVTAIYDWLHPVPGFAVAFAVAA
CGVALAVRWQSQPLAVLVVAGAALAAPFVTVQPVLLVFLIALQAACLPVHLQRDWPFLHVMRTSPAVVAITVFVAVEVIS
SQSGRGGALIAAAVAVAVIGSVGTLVVVRARPADLTASLALAAAATPLLITVPALLERRTAVPAALAYAAVLLAVAFGYL
LPRVRAAVRIPNHTAVVAAVAGALALLEACVAGTDSATLPIALFLVGLGFLGVAGQQRSRVAVVIGAAFGVLGGLALLAD
ASPETLASQHFAQQRLGTASALAAVAGLGVLALLVWSLRRIAGERRGEDEVVGVGASVAALYLVTVAAVSIGVAAGGRDG
FVAGHSVATILWMGAATAALLYGLRKLATSGAVAKVALGSGLLLTGAALAKLFLFDLATLDGFVRVGAFLAVGVLLLLTG
TRYARAFAEAGERASTAAPENPAGGPTPRPGDEAVR

Sequences:

>Translated_836_residues
MSGPAGRSTMSAMTGSIDPALVSRLSGEFTALGTRMGALGRDLEVLHRQVLAGAPAAGSSSGGATRVVGDGPPPGSPTAG
GRDASTGPAAPVPAPPSVAHPTAPPTVPGTGSTPEGWSSSAVEPGGSPSTGSVDAAMTPDSSEDGTASPSGWAEQGAVPP
RDAAQRGVVPPSGRAEQGAVPPREAMGPGAVPRPGWGVPTAVPPVGPAGHWSVPPPGWAGPGAVPRRAPRAGSGAPPRGT
AAAWMPKGAGAPGDPVPSAGGAGGRAVATGSGRGGRGIPPVRAGVIGDGTPWWQRDGVISRILAVAGVAVTLIGVVMLLV
LAAQAGLFGPVPRVVAGAVFSAALVGAGVRVFGRAGGRVGGIALAATGIAGAYLDVVAVTAIYDWLHPVPGFAVAFAVAA
CGVALAVRWQSQPLAVLVVAGAALAAPFVTVQPVLLVFLIALQAACLPVHLQRDWPFLHVMRTSPAVVAITVFVAVEVIS
SQSGRGGALIAAAVAVAVIGSVGTLVVVRARPADLTASLALAAAATPLLITVPALLERRTAVPAALAYAAVLLAVAFGYL
LPRVRAAVRIPNHTAVVAAVAGALALLEACVAGTDSATLPIALFLVGLGFLGVAGQQRSRVAVVIGAAFGVLGGLALLAD
ASPETLASQHFAQQRLGTASALAAVAGLGVLALLVWSLRRIAGERRGEDEVVGVGASVAALYLVTVAAVSIGVAAGGRDG
FVAGHSVATILWMGAATAALLYGLRKLATSGAVAKVALGSGLLLTGAALAKLFLFDLATLDGFVRVGAFLAVGVLLLLTG
TRYARAFAEAGERASTAAPENPAGGPTPRPGDEAVR
>Mature_835_residues
SGPAGRSTMSAMTGSIDPALVSRLSGEFTALGTRMGALGRDLEVLHRQVLAGAPAAGSSSGGATRVVGDGPPPGSPTAGG
RDASTGPAAPVPAPPSVAHPTAPPTVPGTGSTPEGWSSSAVEPGGSPSTGSVDAAMTPDSSEDGTASPSGWAEQGAVPPR
DAAQRGVVPPSGRAEQGAVPPREAMGPGAVPRPGWGVPTAVPPVGPAGHWSVPPPGWAGPGAVPRRAPRAGSGAPPRGTA
AAWMPKGAGAPGDPVPSAGGAGGRAVATGSGRGGRGIPPVRAGVIGDGTPWWQRDGVISRILAVAGVAVTLIGVVMLLVL
AAQAGLFGPVPRVVAGAVFSAALVGAGVRVFGRAGGRVGGIALAATGIAGAYLDVVAVTAIYDWLHPVPGFAVAFAVAAC
GVALAVRWQSQPLAVLVVAGAALAAPFVTVQPVLLVFLIALQAACLPVHLQRDWPFLHVMRTSPAVVAITVFVAVEVISS
QSGRGGALIAAAVAVAVIGSVGTLVVVRARPADLTASLALAAAATPLLITVPALLERRTAVPAALAYAAVLLAVAFGYLL
PRVRAAVRIPNHTAVVAAVAGALALLEACVAGTDSATLPIALFLVGLGFLGVAGQQRSRVAVVIGAAFGVLGGLALLADA
SPETLASQHFAQQRLGTASALAAVAGLGVLALLVWSLRRIAGERRGEDEVVGVGASVAALYLVTVAAVSIGVAAGGRDGF
VAGHSVATILWMGAATAALLYGLRKLATSGAVAKVALGSGLLLTGAALAKLFLFDLATLDGFVRVGAFLAVGVLLLLTGT
RYARAFAEAGERASTAAPENPAGGPTPRPGDEAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81928; Mature: 81796

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPAGRSTMSAMTGSIDPALVSRLSGEFTALGTRMGALGRDLEVLHRQVLAGAPAAGSS
CCCCCCCHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
SGGATRVVGDGPPPGSPTAGGRDASTGPAAPVPAPPSVAHPTAPPTVPGTGSTPEGWSSS
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AVEPGGSPSTGSVDAAMTPDSSEDGTASPSGWAEQGAVPPRDAAQRGVVPPSGRAEQGAV
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCCC
PPREAMGPGAVPRPGWGVPTAVPPVGPAGHWSVPPPGWAGPGAVPRRAPRAGSGAPPRGT
CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAAWMPKGAGAPGDPVPSAGGAGGRAVATGSGRGGRGIPPVRAGVIGDGTPWWQRDGVIS
CEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCHHH
RILAVAGVAVTLIGVVMLLVLAAQAGLFGPVPRVVAGAVFSAALVGAGVRVFGRAGGRVG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHEECCCCCCCC
GIALAATGIAGAYLDVVAVTAIYDWLHPVPGFAVAFAVAACGVALAVRWQSQPLAVLVVA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCEEEEEEH
GAALAAPFVTVQPVLLVFLIALQAACLPVHLQRDWPFLHVMRTSPAVVAITVFVAVEVIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
SQSGRGGALIAAAVAVAVIGSVGTLVVVRARPADLTASLALAAAATPLLITVPALLERRT
CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
AVPAALAYAAVLLAVAFGYLLPRVRAAVRIPNHTAVVAAVAGALALLEACVAGTDSATLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
IALFLVGLGFLGVAGQQRSRVAVVIGAAFGVLGGLALLADASPETLASQHFAQQRLGTAS
HHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
ALAAVAGLGVLALLVWSLRRIAGERRGEDEVVGVGASVAALYLVTVAAVSIGVAAGGRDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCC
FVAGHSVATILWMGAATAALLYGLRKLATSGAVAKVALGSGLLLTGAALAKLFLFDLATL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DGFVRVGAFLAVGVLLLLTGTRYARAFAEAGERASTAAPENPAGGPTPRPGDEAVR
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure 
SGPAGRSTMSAMTGSIDPALVSRLSGEFTALGTRMGALGRDLEVLHRQVLAGAPAAGSS
CCCCCCHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
SGGATRVVGDGPPPGSPTAGGRDASTGPAAPVPAPPSVAHPTAPPTVPGTGSTPEGWSSS
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AVEPGGSPSTGSVDAAMTPDSSEDGTASPSGWAEQGAVPPRDAAQRGVVPPSGRAEQGAV
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCCC
PPREAMGPGAVPRPGWGVPTAVPPVGPAGHWSVPPPGWAGPGAVPRRAPRAGSGAPPRGT
CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAAWMPKGAGAPGDPVPSAGGAGGRAVATGSGRGGRGIPPVRAGVIGDGTPWWQRDGVIS
CEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCHHH
RILAVAGVAVTLIGVVMLLVLAAQAGLFGPVPRVVAGAVFSAALVGAGVRVFGRAGGRVG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHEECCCCCCCC
GIALAATGIAGAYLDVVAVTAIYDWLHPVPGFAVAFAVAACGVALAVRWQSQPLAVLVVA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCEEEEEEH
GAALAAPFVTVQPVLLVFLIALQAACLPVHLQRDWPFLHVMRTSPAVVAITVFVAVEVIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
SQSGRGGALIAAAVAVAVIGSVGTLVVVRARPADLTASLALAAAATPLLITVPALLERRT
CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
AVPAALAYAAVLLAVAFGYLLPRVRAAVRIPNHTAVVAAVAGALALLEACVAGTDSATLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
IALFLVGLGFLGVAGQQRSRVAVVIGAAFGVLGGLALLADASPETLASQHFAQQRLGTAS
HHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
ALAAVAGLGVLALLVWSLRRIAGERRGEDEVVGVGASVAALYLVTVAAVSIGVAAGGRDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCC
FVAGHSVATILWMGAATAALLYGLRKLATSGAVAKVALGSGLLLTGAALAKLFLFDLATL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DGFVRVGAFLAVGVLLLLTGTRYARAFAEAGERASTAAPENPAGGPTPRPGDEAVR
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA