| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is fabG [H]
Identifier: 54027456
GI number: 54027456
Start: 5808307
End: 5809089
Strand: Reverse
Name: fabG [H]
Synonym: nfa54820
Alternate gene names: 54027456
Gene position: 5809089-5808307 (Counterclockwise)
Preceding gene: 54027461
Following gene: 54027455
Centisome position: 96.48
GC content: 68.97
Gene sequence:
>783_bases ATGAGCTCACCGACGGTGTTCCTCACCGGTGCGGCCGCGGGCATCGGCCGGGCCACGGCCCTGCTTTTCGCTGCGCAGGG CTACCGGGTGGGCGCCTACGACATCGACGAGGTCGGCCTTGGCCGGCTCGCCGCCGAGATCGACGCCGCCGGTGGGCAGG TGCGCACCGGCGTCCTGGATGTGACGAACGACACGCACTGGCAGCAGCGGCTCGCCGAGTTCCACGAGGCACACGGCCGG CTCGACATCCTGATCAACAACGCGGGGATCCTGCGCGCGGGTCCGTTCGAATCCATCGATCTGCGCACGCACCGCGCGAT CGTGGACGTGAATCTCGATGGCGTGATAGCCGGTTCGCATCACGCGTTCCCCTACCTGCGGGACACCGCGGGTGCCCAGC TGGTGAATCTGTGTTCGGCGTCGGCCATCTACGGCCAGCCCGAGCTGGCCAGCTACGGCGCGACCAAGTCGGCGGTCAAG AGCCTCACCGAGGCACTGGATCTGGAATGGGCGCGCCACGACATCCGGGTGCTCGCGATCTGGCCGTTGTTCGTCGCGAC CGGCATGGTGGACGGCGTGCAGACCGGCACCACCCGGTCGCTGGGCATCCGGCTCACCGCCGAGGATGTGGCCCGAGGTA TCTGGGACGCCACCCGCAACCGCCCCCGGCTGCCACGGGTGCACTACGCGATCGGCAGGCAGGCCAAACTGCTGGCACTC ACCGCCAAACTCTCCCCCGGGTGGGCGGTGCGCACGGCCAACAAGTACTTCTCCGGTTCCTGA
Upstream 100 bases:
>100_bases GGCGTCGTCGCCGGTGCCCGGCCATCAGAGCAGGGTAGGGGACACCGATTTACCTGTGAACCCCGGTCACCACAGCAGAT TCCGGCACTAGACTGCCCGC
Downstream 100 bases:
>100_bases CCTCGCGGCCGACCGGATCCGGTGGCGCGGGGGCACCGGTGGGCGTCGCGCGCACGGCCTCGGGAGCTGTCAGAATTCGT CCGAAGGGGGTTACCGATGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSSPTVFLTGAAAGIGRATALLFAAQGYRVGAYDIDEVGLGRLAAEIDAAGGQVRTGVLDVTNDTHWQQRLAEFHEAHGR LDILINNAGILRAGPFESIDLRTHRAIVDVNLDGVIAGSHHAFPYLRDTAGAQLVNLCSASAIYGQPELASYGATKSAVK SLTEALDLEWARHDIRVLAIWPLFVATGMVDGVQTGTTRSLGIRLTAEDVARGIWDATRNRPRLPRVHYAIGRQAKLLAL TAKLSPGWAVRTANKYFSGS
Sequences:
>Translated_260_residues MSSPTVFLTGAAAGIGRATALLFAAQGYRVGAYDIDEVGLGRLAAEIDAAGGQVRTGVLDVTNDTHWQQRLAEFHEAHGR LDILINNAGILRAGPFESIDLRTHRAIVDVNLDGVIAGSHHAFPYLRDTAGAQLVNLCSASAIYGQPELASYGATKSAVK SLTEALDLEWARHDIRVLAIWPLFVATGMVDGVQTGTTRSLGIRLTAEDVARGIWDATRNRPRLPRVHYAIGRQAKLLAL TAKLSPGWAVRTANKYFSGS >Mature_259_residues SSPTVFLTGAAAGIGRATALLFAAQGYRVGAYDIDEVGLGRLAAEIDAAGGQVRTGVLDVTNDTHWQQRLAEFHEAHGRL DILINNAGILRAGPFESIDLRTHRAIVDVNLDGVIAGSHHAFPYLRDTAGAQLVNLCSASAIYGQPELASYGATKSAVKS LTEALDLEWARHDIRVLAIWPLFVATGMVDGVQTGTTRSLGIRLTAEDVARGIWDATRNRPRLPRVHYAIGRQAKLLALT AKLSPGWAVRTANKYFSGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4504505, Length=197, Percent_Identity=32.48730964467, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI142976729, Length=211, Percent_Identity=28.436018957346, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI59889578, Length=162, Percent_Identity=32.7160493827161, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI40254992, Length=180, Percent_Identity=30, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI20149619, Length=257, Percent_Identity=25.6809338521401, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=32.4324324324324, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=30.4123711340206, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790717, Length=193, Percent_Identity=27.979274611399, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI2367175, Length=223, Percent_Identity=29.5964125560538, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1786812, Length=189, Percent_Identity=29.1005291005291, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787820, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=26.984126984127, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789208, Length=206, Percent_Identity=28.1553398058252, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994604, Length=189, Percent_Identity=32.2751322751323, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=35.7512953367876, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=30.5263157894737, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17564282, Length=246, Percent_Identity=28.4552845528455, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI193203117, Length=243, Percent_Identity=25.9259259259259, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203115, Length=239, Percent_Identity=25.9414225941423, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17567345, Length=189, Percent_Identity=28.042328042328, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17562904, Length=203, Percent_Identity=30.0492610837438, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568967, Length=235, Percent_Identity=28.936170212766, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=29.7979797979798, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562990, Length=202, Percent_Identity=28.7128712871287, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=30.7317073170732, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17538480, Length=199, Percent_Identity=30.6532663316583, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=27.7153558052434, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=29.7979797979798, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560150, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508895, Length=246, Percent_Identity=24.7967479674797, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565030, Length=193, Percent_Identity=29.0155440414508, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17555706, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=33.1550802139037, Blast_Score=90, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI23397609, Length=196, Percent_Identity=35.7142857142857, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI21357041, Length=185, Percent_Identity=31.3513513513514, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24644339, Length=185, Percent_Identity=30.8108108108108, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI28571526, Length=183, Percent_Identity=31.6939890710383, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=31.7948717948718, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24640492, Length=261, Percent_Identity=24.1379310344828, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI281364892, Length=224, Percent_Identity=27.2321428571429, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24639444, Length=196, Percent_Identity=31.1224489795918, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643142, Length=202, Percent_Identity=32.1782178217822, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581726, Length=234, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 27852; Mature: 27721
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPTVFLTGAAAGIGRATALLFAAQGYRVGAYDIDEVGLGRLAAEIDAAGGQVRTGVLD CCCCEEEEEECCCCHHHHHEEEEEECCCEECCCCCCHHCHHHHHHHHHCCCCEEEEEEEE VTNDTHWQQRLAEFHEAHGRLDILINNAGILRAGPFESIDLRTHRAIVDVNLDGVIAGSH CCCCHHHHHHHHHHHHHCCEEEEEEECCCEEECCCCCCEEEEEEEEEEEECCCEEEECCC HAFPYLRDTAGAQLVNLCSASAIYGQPELASYGATKSAVKSLTEALDLEWARHDIRVLAI CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEE WPLFVATGMVDGVQTGTTRSLGIRLTAEDVARGIWDATRNRPRLPRVHYAIGRQAKLLAL HHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE TAKLSPGWAVRTANKYFSGS EEECCCCEEEEECCCCCCCC >Mature Secondary Structure SSPTVFLTGAAAGIGRATALLFAAQGYRVGAYDIDEVGLGRLAAEIDAAGGQVRTGVLD CCCEEEEEECCCCHHHHHEEEEEECCCEECCCCCCHHCHHHHHHHHHCCCCEEEEEEEE VTNDTHWQQRLAEFHEAHGRLDILINNAGILRAGPFESIDLRTHRAIVDVNLDGVIAGSH CCCCHHHHHHHHHHHHHCCEEEEEEECCCEEECCCCCCEEEEEEEEEEEECCCEEEECCC HAFPYLRDTAGAQLVNLCSASAIYGQPELASYGATKSAVKSLTEALDLEWARHDIRVLAI CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEE WPLFVATGMVDGVQTGTTRSLGIRLTAEDVARGIWDATRNRPRLPRVHYAIGRQAKLLAL HHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE TAKLSPGWAVRTANKYFSGS EEECCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]