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The map label for this gene is 54027437

Identifier: 54027437

GI number: 54027437

Start: 5782716

End: 5783783

Strand: Reverse

Name: 54027437

Synonym: nfa54630

Alternate gene names: NA

Gene position: 5783783-5782716 (Counterclockwise)

Preceding gene: 54027438

Following gene: 54027434

Centisome position: 96.06

GC content: 74.53

Gene sequence:

>1068_bases
ATGCTGCGGCCGTGCGCGCACGCGGCACCGCGATACGGCATCGACGCGTCGCAGTGGCGTGCGCACATGTGCGGATTGTG
TCTGGGGCTGCGGGACGGGCACGGACAGGTCGCCCGCGCCGCGACCAACACCGACGCGATTCTGCTGAGCGTGCTCACCG
AGGCGCAGGCGCCGCCGCTCGCGGCCCGGACCGAGGCGGGCCGCTGCCCGCTGCGGGGGATGGCGCGCGCCGAGGTGGCC
GCGGCCGACGCTCCGGGTGTGCAGCTGGCCGCGACCGCATCCCTGCTGCTCGGTGCGGCCGCGCTGCGCGACCGGGTCGA
CGACGGCGACGCCGCCCCGCTGACCGGGCGGCCGATGGTCCGGCTGTCGGCGTCGTGGGCGGCGCGGGCGCGCACCCAGG
CACGGCGGATCGGCTTCGACGTGGACCCGCTGGTCGCGGCGATCGCCGCGCAGACCGACCGCGAGCGGTCCGCCACCGAC
CTCGCCGAGCTGACCGCGGCCACCCAACTGTGCGCCGCCGAGTTCTTCGCCCACACCGCCGTGCTCGCGGGCCGCGCCGA
CAACGCCGACCACTTACGCACGGCCGGAACACATTTCGGCCGCATCGCACACCTCGCCGACGCCGTGCAGGATCTCGACG
CCGACCGCACGACCGGCCGGTTCAACCCACTCGACGCCTCCGACACCTCCGTGGCCCAGGCACAGGCCCTGATCCAGGAG
TCCGACGCGCAGATCCGCCGGGCCCTCGCGGCCGCCGAACTCGCCGAGGTCCCCACGGTGCGCTGGATGCTGCTCGACCC
ACTGCACGCGGTGCTGCACCGCGTCGCTGCCGGCACCCGTCATCGCCCCACCCGGCCTGGCATCGGCGCGGCCATCGGCA
TCACCCTCACCCAGTACTGCACCGGGTACGCCTGCTGCGCCGACCACACCAATCCCTGCACCGGCCGACGGGAACAGGCC
TGGCGCAAGAGCTGCGACTGCGGTTCCTGCTGTGACTGCGCGAATTGCTGCTCCGGCTGCGACGGCAAGGGCGGCTGCTG
CGACGGGTGCGGGTGCTGCGACTGCTGA

Upstream 100 bases:

>100_bases
GGCGTTGCGCGGTGCTCGCCGCTCTGTCACGATGTGGCGCGATCGACTGCGGACAGGGCGGTATGCCGCCCGGCGGGAAC
GGGGGGCGGAATTGTTCGGA

Downstream 100 bases:

>100_bases
ACCGCCCCCGGGAACAGCTTGTCCCGGGGGCGGTTTCGCCTGGCAATATCAGCCTTGCAAACTCAGCCTCGAAATATCAG
CGCAGCGTCGCGGTGAGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: Regulatory Protein; Regulator; LOW QUALITY PROTEIN Expression Regulator; Transcription Regulator

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MLRPCAHAAPRYGIDASQWRAHMCGLCLGLRDGHGQVARAATNTDAILLSVLTEAQAPPLAARTEAGRCPLRGMARAEVA
AADAPGVQLAATASLLLGAAALRDRVDDGDAAPLTGRPMVRLSASWAARARTQARRIGFDVDPLVAAIAAQTDRERSATD
LAELTAATQLCAAEFFAHTAVLAGRADNADHLRTAGTHFGRIAHLADAVQDLDADRTTGRFNPLDASDTSVAQAQALIQE
SDAQIRRALAAAELAEVPTVRWMLLDPLHAVLHRVAAGTRHRPTRPGIGAAIGITLTQYCTGYACCADHTNPCTGRREQA
WRKSCDCGSCCDCANCCSGCDGKGGCCDGCGCCDC

Sequences:

>Translated_355_residues
MLRPCAHAAPRYGIDASQWRAHMCGLCLGLRDGHGQVARAATNTDAILLSVLTEAQAPPLAARTEAGRCPLRGMARAEVA
AADAPGVQLAATASLLLGAAALRDRVDDGDAAPLTGRPMVRLSASWAARARTQARRIGFDVDPLVAAIAAQTDRERSATD
LAELTAATQLCAAEFFAHTAVLAGRADNADHLRTAGTHFGRIAHLADAVQDLDADRTTGRFNPLDASDTSVAQAQALIQE
SDAQIRRALAAAELAEVPTVRWMLLDPLHAVLHRVAAGTRHRPTRPGIGAAIGITLTQYCTGYACCADHTNPCTGRREQA
WRKSCDCGSCCDCANCCSGCDGKGGCCDGCGCCDC
>Mature_355_residues
MLRPCAHAAPRYGIDASQWRAHMCGLCLGLRDGHGQVARAATNTDAILLSVLTEAQAPPLAARTEAGRCPLRGMARAEVA
AADAPGVQLAATASLLLGAAALRDRVDDGDAAPLTGRPMVRLSASWAARARTQARRIGFDVDPLVAAIAAQTDRERSATD
LAELTAATQLCAAEFFAHTAVLAGRADNADHLRTAGTHFGRIAHLADAVQDLDADRTTGRFNPLDASDTSVAQAQALIQE
SDAQIRRALAAAELAEVPTVRWMLLDPLHAVLHRVAAGTRHRPTRPGIGAAIGITLTQYCTGYACCADHTNPCTGRREQA
WRKSCDCGSCCDCANCCSGCDGKGGCCDGCGCCDC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37124; Mature: 37124

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPCAHAAPRYGIDASQWRAHMCGLCLGLRDGHGQVARAATNTDAILLSVLTEAQAPPL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCC
AARTEAGRCPLRGMARAEVAAADAPGVQLAATASLLLGAAALRDRVDDGDAAPLTGRPMV
CCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
RLSASWAARARTQARRIGFDVDPLVAAIAAQTDRERSATDLAELTAATQLCAAEFFAHTA
EEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAGRADNADHLRTAGTHFGRIAHLADAVQDLDADRTTGRFNPLDASDTSVAQAQALIQE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SDAQIRRALAAAELAEVPTVRWMLLDPLHAVLHRVAAGTRHRPTRPGIGAAIGITLTQYC
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
TGYACCADHTNPCTGRREQAWRKSCDCGSCCDCANCCSGCDGKGGCCDGCGCCDC
CCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRPCAHAAPRYGIDASQWRAHMCGLCLGLRDGHGQVARAATNTDAILLSVLTEAQAPPL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCC
AARTEAGRCPLRGMARAEVAAADAPGVQLAATASLLLGAAALRDRVDDGDAAPLTGRPMV
CCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
RLSASWAARARTQARRIGFDVDPLVAAIAAQTDRERSATDLAELTAATQLCAAEFFAHTA
EEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAGRADNADHLRTAGTHFGRIAHLADAVQDLDADRTTGRFNPLDASDTSVAQAQALIQE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SDAQIRRALAAAELAEVPTVRWMLLDPLHAVLHRVAAGTRHRPTRPGIGAAIGITLTQYC
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
TGYACCADHTNPCTGRREQAWRKSCDCGSCCDCANCCSGCDGKGGCCDGCGCCDC
CCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA