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The map label for this gene is betI [C]

Identifier: 54027417

GI number: 54027417

Start: 5759836

End: 5760522

Strand: Reverse

Name: betI [C]

Synonym: nfa54430

Alternate gene names: 54027417

Gene position: 5760522-5759836 (Counterclockwise)

Preceding gene: 54027418

Following gene: 54027415

Centisome position: 95.67

GC content: 71.76

Gene sequence:

>687_bases
GTGCCCGAGACTCAGGCGCGGCGCCGGGCGCGCACCCGCGCGCGGCTGCTCGACGCGGCCGTGGCGAGCCTGGTCGAAGT
CGGCTACGCGGGCACCACCACCCTCGAGGTGCAGAACCGCGCCGGCGTGCCGCGCGGCACCCTGCAACACCACTTCCCGA
CCAAGCCCGCCCTGCTCGCGGGCGTGGTGGAGCATCTGGCCGAACGCCGATTCGAGCAGCTGAGTACCGAATTCGCGCAG
ATACCGCCCGGCTGCGACCGCCTCGCGGCGGCGGTGGAACTGACGATGGGCATGCTCTCGGGGCCCTCGTTCCTCGCCAC
CCTGGAATGCTGGGTCGGCGCGCGCACCGACCCGGATCTGCGCGCCGCGTTCCTGCCCCTGGAACAGCGCCTGCTCGAGC
AGATGCACCTCCGCGTGCGCGACCTGTTCCGCGCCGAATTCCCCGACGATTCCCGCGTCCCCACGATCACCGAGTTCACC
ATCGAGATCATGACCGGCCTGACGATGCGCGCCCTGCTCACCGGCCATGTCGAGCAGAACCGCCTGCTGCGCGACCGCTG
GGTGAACGCCGTGCGCATCCTGCTCGGCGGAGCACCCGCCGACACCCTGCTGGATGCGGGCGGTCAGCTCGGGCCGGGGT
CGAACTGTTCGAGCAGGACGCGGGCGCAGGTGTCCGGGTCGTCGTAG

Upstream 100 bases:

>100_bases
GGCGAGGTGGCGTTGCCCGCACTGGTGTCGAAGGACGCCGCTGAGGGCGCGCTCGCGTTCGCCGAGAAGCGCGAACCCCG
CTGGCAGGGACGCTGATCCG

Downstream 100 bases:

>100_bases
AACGGGGTGTGGCCGCTGCCGAAGAGGGTCCGGTGGCGGGCGGTGGGCAGCGCGAGGCGGGCGCGGCGGCTCTGGGTGGC
GTAGGTGAGCAGCACGTCGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MPETQARRRARTRARLLDAAVASLVEVGYAGTTTLEVQNRAGVPRGTLQHHFPTKPALLAGVVEHLAERRFEQLSTEFAQ
IPPGCDRLAAAVELTMGMLSGPSFLATLECWVGARTDPDLRAAFLPLEQRLLEQMHLRVRDLFRAEFPDDSRVPTITEFT
IEIMTGLTMRALLTGHVEQNRLLRDRWVNAVRILLGGAPADTLLDAGGQLGPGSNCSSRTRAQVSGSS

Sequences:

>Translated_228_residues
MPETQARRRARTRARLLDAAVASLVEVGYAGTTTLEVQNRAGVPRGTLQHHFPTKPALLAGVVEHLAERRFEQLSTEFAQ
IPPGCDRLAAAVELTMGMLSGPSFLATLECWVGARTDPDLRAAFLPLEQRLLEQMHLRVRDLFRAEFPDDSRVPTITEFT
IEIMTGLTMRALLTGHVEQNRLLRDRWVNAVRILLGGAPADTLLDAGGQLGPGSNCSSRTRAQVSGSS
>Mature_227_residues
PETQARRRARTRARLLDAAVASLVEVGYAGTTTLEVQNRAGVPRGTLQHHFPTKPALLAGVVEHLAERRFEQLSTEFAQI
PPGCDRLAAAVELTMGMLSGPSFLATLECWVGARTDPDLRAAFLPLEQRLLEQMHLRVRDLFRAEFPDDSRVPTITEFTI
EIMTGLTMRALLTGHVEQNRLLRDRWVNAVRILLGGAPADTLLDAGGQLGPGSNCSSRTRAQVSGSS

Specific function: Repressor Involved In Choline Regulation Of The Bet Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24949; Mature: 24818

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPETQARRRARTRARLLDAAVASLVEVGYAGTTTLEVQNRAGVPRGTLQHHFPTKPALLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH
GVVEHLAERRFEQLSTEFAQIPPGCDRLAAAVELTMGMLSGPSFLATLECWVGARTDPDL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHH
RAAFLPLEQRLLEQMHLRVRDLFRAEFPDDSRVPTITEFTIEIMTGLTMRALLTGHVEQN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLRDRWVNAVRILLGGAPADTLLDAGGQLGPGSNCSSRTRAQVSGSS
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PETQARRRARTRARLLDAAVASLVEVGYAGTTTLEVQNRAGVPRGTLQHHFPTKPALLA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH
GVVEHLAERRFEQLSTEFAQIPPGCDRLAAAVELTMGMLSGPSFLATLECWVGARTDPDL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHH
RAAFLPLEQRLLEQMHLRVRDLFRAEFPDDSRVPTITEFTIEIMTGLTMRALLTGHVEQN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLRDRWVNAVRILLGGAPADTLLDAGGQLGPGSNCSSRTRAQVSGSS
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]