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The map label for this gene is 54027344

Identifier: 54027344

GI number: 54027344

Start: 5674114

End: 5674932

Strand: Reverse

Name: 54027344

Synonym: nfa53700

Alternate gene names: NA

Gene position: 5674932-5674114 (Counterclockwise)

Preceding gene: 54027345

Following gene: 54027340

Centisome position: 94.25

GC content: 69.47

Gene sequence:

>819_bases
ATGTTGAGCATCGGAGACTTCGCCAGGCACGGGCGGGTGTCGGTGCGGATGTTGCGCCACTACGACGCCCTCGGTCTGCT
GCGCCCCGACCGGGTCGACCCGGCCACCGGCTACCGGTCCTACGGGATCGGGCAGCTGGCGCGGCTGAACCGGATCGTCG
CGCTGAAGGATCTCGGGTTCACCCTGGACCAGGTCGGCCGGATTCTGGACGCCCGGGTCGGCGGTGCGGAACTGCGCGGC
ATGCTGATGCTGCGCCGCGCCGAACTCGAGCAGCGCATCGCCGCGGACCGCGCGCGGCTCGCCCAGATCGAGACGAGGCT
CCGCATAATCGAAAGGGAGGGTGTCATGCCCGTCGAGGAAGTGGTGATCAGGTCGGTGCCCGCGGTGCGGGTGGCAGAGC
TGAGCGAGGTCGCGGCCGATTTCGAGCCGTCGTCCATCGGTCCGGTGGTGGGCAAGCTGTTCGACGAACTCTGTCCGCGG
CTCGAGCGCGCCGGGGTGGCGATCGTGGGACCGGCGATCTGCTACTACGAGGAACGCGGCGACGGTTCGGTGCTGGCGCA
CGCCGGGATGCCGGTGAACGTCGAGCCCGACGAGCGCTACGACTTCGCGGTGGTGGACCTGCCTGCGATGGAACAGGCGG
CCACGATGGTGTATCGCGGGGACATGAACGAGGTGCTCGAACCCTGGCAGGGGCTGGGCCGCTGGATCGCCGACAACGGC
TACCGCACGATCGGGCCGAGCCGGGAGGTCACCCTCGAGTACTCCGAGGACAGCGCGAAGTGGGTGACCGAGCTCCAGGA
GCCGATCGCGCCCGCGTGA

Upstream 100 bases:

>100_bases
GGACGGCTACCTCACCGGCGATGCCTGCGAGTTCTACCGCAGGCATCCCCTGTGAGCGCTTGACCCTCACACCGTGTCAG
CCCCTACACCGGGAGCCGTC

Downstream 100 bases:

>100_bases
GCTCAGATCGCGCCCTTGCCGGTGAGGAAATCGGCGGTGGGTGCGGCGATGAGCTCGACGTTCTGGTTGTGGCCCAGCCG
TGGCAGTTCCCGGTGATGGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; MerR-Family Transcriptional Regulator; LOW QUALITY PROTEIN Transcriptional Regulator; Bacterial Transcription Activator; DeoR Family Transcriptional Regulator

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLSIGDFARHGRVSVRMLRHYDALGLLRPDRVDPATGYRSYGIGQLARLNRIVALKDLGFTLDQVGRILDARVGGAELRG
MLMLRRAELEQRIAADRARLAQIETRLRIIEREGVMPVEEVVIRSVPAVRVAELSEVAADFEPSSIGPVVGKLFDELCPR
LERAGVAIVGPAICYYEERGDGSVLAHAGMPVNVEPDERYDFAVVDLPAMEQAATMVYRGDMNEVLEPWQGLGRWIADNG
YRTIGPSREVTLEYSEDSAKWVTELQEPIAPA

Sequences:

>Translated_272_residues
MLSIGDFARHGRVSVRMLRHYDALGLLRPDRVDPATGYRSYGIGQLARLNRIVALKDLGFTLDQVGRILDARVGGAELRG
MLMLRRAELEQRIAADRARLAQIETRLRIIEREGVMPVEEVVIRSVPAVRVAELSEVAADFEPSSIGPVVGKLFDELCPR
LERAGVAIVGPAICYYEERGDGSVLAHAGMPVNVEPDERYDFAVVDLPAMEQAATMVYRGDMNEVLEPWQGLGRWIADNG
YRTIGPSREVTLEYSEDSAKWVTELQEPIAPA
>Mature_272_residues
MLSIGDFARHGRVSVRMLRHYDALGLLRPDRVDPATGYRSYGIGQLARLNRIVALKDLGFTLDQVGRILDARVGGAELRG
MLMLRRAELEQRIAADRARLAQIETRLRIIEREGVMPVEEVVIRSVPAVRVAELSEVAADFEPSSIGPVVGKLFDELCPR
LERAGVAIVGPAICYYEERGDGSVLAHAGMPVNVEPDERYDFAVVDLPAMEQAATMVYRGDMNEVLEPWQGLGRWIADNG
YRTIGPSREVTLEYSEDSAKWVTELQEPIAPA

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30170; Mature: 30170

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIGDFARHGRVSVRMLRHYDALGLLRPDRVDPATGYRSYGIGQLARLNRIVALKDLGF
CCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCC
TLDQVGRILDARVGGAELRGMLMLRRAELEQRIAADRARLAQIETRLRIIEREGVMPVEE
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VVIRSVPAVRVAELSEVAADFEPSSIGPVVGKLFDELCPRLERAGVAIVGPAICYYEERG
HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEECC
DGSVLAHAGMPVNVEPDERYDFAVVDLPAMEQAATMVYRGDMNEVLEPWQGLGRWIADNG
CCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
YRTIGPSREVTLEYSEDSAKWVTELQEPIAPA
CEECCCCCEEEEEECCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLSIGDFARHGRVSVRMLRHYDALGLLRPDRVDPATGYRSYGIGQLARLNRIVALKDLGF
CCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCC
TLDQVGRILDARVGGAELRGMLMLRRAELEQRIAADRARLAQIETRLRIIEREGVMPVEE
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VVIRSVPAVRVAELSEVAADFEPSSIGPVVGKLFDELCPRLERAGVAIVGPAICYYEERG
HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEECC
DGSVLAHAGMPVNVEPDERYDFAVVDLPAMEQAATMVYRGDMNEVLEPWQGLGRWIADNG
CCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
YRTIGPSREVTLEYSEDSAKWVTELQEPIAPA
CEECCCCCEEEEEECCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA