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The map label for this gene is ydcR [H]

Identifier: 54027340

GI number: 54027340

Start: 5670740

End: 5672239

Strand: Reverse

Name: ydcR [H]

Synonym: nfa53660

Alternate gene names: 54027340

Gene position: 5672239-5670740 (Counterclockwise)

Preceding gene: 54027344

Following gene: 54027338

Centisome position: 94.2

GC content: 72.6

Gene sequence:

>1500_bases
ATGGCGACACGAGTGATCGGCGCGGCCGGGCTGGCGCGCGACCTGGGCAACTGGCGCAGCGCGGGCGAGGACGAGCACGG
CCGCCGCAGCAGACCGGCCTACCTGGCCCTGGCCGAAGGCATCCGGCTGCTCATCCACGACGGCCGCGCCCCGCTCGGCG
TCGCGCTGCCCAGCGAGCGCGATCTGGCCGCCACCCTCGGCGTCAGCCGCACCACCATCACCTCCACCTACGCGCTGCTG
CGCGAGCACGGCTACTTGATCAGCCGCCAGGGTTCGCGCAGCACCGTCGCGCTGCCGCCCGCGGTCCCGAACGACGGCAG
CCGTGCCGCCCGCGGCATCCTCGCGACGATGGTCCCGGCCGAGCTCACCACCGTCGACCTCACCTATGCGGCCATGACCG
CGCCCGAGGAGATGCACGAGGCGTACGCGACGGCGCTACAGGCGCTGCCCGCGTATCTGGGCACCCACGGCATGGACCCG
GTGGGCATGCGTGCGCTGCGGGAGGCGCTCGCGCGCCGTTACACCGCCCGCGGCCTGCCCACCGATCCCGACCAGATCCT
GGTCACCCTCGGCGCGCAGCACGGCCTGCGCCTGCTGCTCAACGTGCTCACCGCGCCGGCGGCCAGGGTGCTGATCGAGC
ACCCCACCTACCCCAACGCCATCGAGGCGATCCGTGATGTCGGCGCCCGGCCCATCCCCGTGCCGCTCCTGCTGGAGAAC
CCTTCGGCCGGTTGGGATCTGGACGGGTTGCGCAGCGCCGCCCGGCAGACCGCGGCCACCCTGGCCTACCTGGTGCCCGA
CTTCAACAATCCGACCGGGATGCTGCTCGACGCCGAGGGCCGTGCCGAACTGGCCGCCATCGCCCGTGACACCAGGATGA
CCGTCGTGGTCGACGAATCGATGGTGGATCTCGGCCTCGACGTCGACACCATGCCCCCGCCGGTGGCCGCGTTCGGCAAG
GGCGCGGAGATCATCACGATCGGTTCGGCCTCGAAGTCGTTCTGGGGCGGCCTGCGGGTCGGCTGGATCCGCACCAACCA
GAGCCTCATCACCAAGTTGCTCGGCATCCGCTCCACCGTCGACCTCGGCACGCCGGTGATGGATCAGCTCGCCACCGTGC
ACCTGCTCGAACACGCCGAGACGATCCTGGAGCGCCGCCGCGCACAGCTGCGCTCCCAACGCGCGGCCCTGCTCGACGCG
ATCGCCGAGGAACTGCCGGACTGGCGGGTGCAGCCCGGGGCCGGGGGCATGTCGGTGTGGGCGCAGCTGCCCGCGCCGGT
GTCGACGGCACTGGCCGCCACCGCGCCCAACCACGGCGTGCTGCTGGCCGCCGGGCCGCGGTTCGGCGTGCAGGGCGCCT
TCGAGCGGTTCCTGCGGTTGCCCTACACCCACGGCGAGCCGGAATTGCGGTTGGCGGTCAAGGGAATCGCGGCCGCCACC
GCCGCGCTCACCCCGCGGGCGGCCGATCCGCTCAACCCGTTGAACATGTCGATCCGCTGA

Upstream 100 bases:

>100_bases
ACGGCGGCGGCGATGAGGAGGGACAGCAGCGTGGTCATGTCCTTCAGATTCCGCCGACTGGCCTTGCTTTCAAATAGCCA
ATCCGCGAATACTGGACTTC

Downstream 100 bases:

>100_bases
GGGCCGCGCCCGGCGAACGCGAACGCCCCGTGGCATCCCACGGGGCGTTCGGGGCGAGAACTCAGTCCGCCCAGACGTTC
TCGATCGGCGTCGCCTCGGT

Product: putative transcriptional regulator/aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MATRVIGAAGLARDLGNWRSAGEDEHGRRSRPAYLALAEGIRLLIHDGRAPLGVALPSERDLAATLGVSRTTITSTYALL
REHGYLISRQGSRSTVALPPAVPNDGSRAARGILATMVPAELTTVDLTYAAMTAPEEMHEAYATALQALPAYLGTHGMDP
VGMRALREALARRYTARGLPTDPDQILVTLGAQHGLRLLLNVLTAPAARVLIEHPTYPNAIEAIRDVGARPIPVPLLLEN
PSAGWDLDGLRSAARQTAATLAYLVPDFNNPTGMLLDAEGRAELAAIARDTRMTVVVDESMVDLGLDVDTMPPPVAAFGK
GAEIITIGSASKSFWGGLRVGWIRTNQSLITKLLGIRSTVDLGTPVMDQLATVHLLEHAETILERRRAQLRSQRAALLDA
IAEELPDWRVQPGAGGMSVWAQLPAPVSTALAATAPNHGVLLAAGPRFGVQGAFERFLRLPYTHGEPELRLAVKGIAAAT
AALTPRAADPLNPLNMSIR

Sequences:

>Translated_499_residues
MATRVIGAAGLARDLGNWRSAGEDEHGRRSRPAYLALAEGIRLLIHDGRAPLGVALPSERDLAATLGVSRTTITSTYALL
REHGYLISRQGSRSTVALPPAVPNDGSRAARGILATMVPAELTTVDLTYAAMTAPEEMHEAYATALQALPAYLGTHGMDP
VGMRALREALARRYTARGLPTDPDQILVTLGAQHGLRLLLNVLTAPAARVLIEHPTYPNAIEAIRDVGARPIPVPLLLEN
PSAGWDLDGLRSAARQTAATLAYLVPDFNNPTGMLLDAEGRAELAAIARDTRMTVVVDESMVDLGLDVDTMPPPVAAFGK
GAEIITIGSASKSFWGGLRVGWIRTNQSLITKLLGIRSTVDLGTPVMDQLATVHLLEHAETILERRRAQLRSQRAALLDA
IAEELPDWRVQPGAGGMSVWAQLPAPVSTALAATAPNHGVLLAAGPRFGVQGAFERFLRLPYTHGEPELRLAVKGIAAAT
AALTPRAADPLNPLNMSIR
>Mature_498_residues
ATRVIGAAGLARDLGNWRSAGEDEHGRRSRPAYLALAEGIRLLIHDGRAPLGVALPSERDLAATLGVSRTTITSTYALLR
EHGYLISRQGSRSTVALPPAVPNDGSRAARGILATMVPAELTTVDLTYAAMTAPEEMHEAYATALQALPAYLGTHGMDPV
GMRALREALARRYTARGLPTDPDQILVTLGAQHGLRLLLNVLTAPAARVLIEHPTYPNAIEAIRDVGARPIPVPLLLENP
SAGWDLDGLRSAARQTAATLAYLVPDFNNPTGMLLDAEGRAELAAIARDTRMTVVVDESMVDLGLDVDTMPPPVAAFGKG
AEIITIGSASKSFWGGLRVGWIRTNQSLITKLLGIRSTVDLGTPVMDQLATVHLLEHAETILERRRAQLRSQRAALLDAI
AEELPDWRVQPGAGGMSVWAQLPAPVSTALAATAPNHGVLLAAGPRFGVQGAFERFLRLPYTHGEPELRLAVKGIAAATA
ALTPRAADPLNPLNMSIR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=303, Percent_Identity=25.0825082508251, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI33469970, Length=303, Percent_Identity=25.0825082508251, Blast_Score=77, Evalue=5e-14,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=27.991452991453, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790797, Length=455, Percent_Identity=25.4945054945055, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788722, Length=335, Percent_Identity=27.4626865671642, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788332, Length=226, Percent_Identity=27.8761061946903, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567663, Length=334, Percent_Identity=23.0538922155689, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21356535, Length=306, Percent_Identity=23.8562091503268, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53084; Mature: 52953

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRVIGAAGLARDLGNWRSAGEDEHGRRSRPAYLALAEGIRLLIHDGRAPLGVALPSER
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCEEEECCCCC
DLAATLGVSRTTITSTYALLREHGYLISRQGSRSTVALPPAVPNDGSRAARGILATMVPA
CHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCC
ELTTVDLTYAAMTAPEEMHEAYATALQALPAYLGTHGMDPVGMRALREALARRYTARGLP
HHEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
TDPDQILVTLGAQHGLRLLLNVLTAPAARVLIEHPTYPNAIEAIRDVGARPIPVPLLLEN
CCHHHEEEEECCHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHCCCCCCCCEEEECC
PSAGWDLDGLRSAARQTAATLAYLVPDFNNPTGMLLDAEGRAELAAIARDTRMTVVVDES
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCEEEEEEECC
MVDLGLDVDTMPPPVAAFGKGAEIITIGSASKSFWGGLRVGWIRTNQSLITKLLGIRSTV
HHHCCCCCCCCCCCHHHHCCCCEEEEECCCCCHHCCCEEEEEEECCHHHHHHHHHCCHHH
DLGTPVMDQLATVHLLEHAETILERRRAQLRSQRAALLDAIAEELPDWRVQPGAGGMSVW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHH
AQLPAPVSTALAATAPNHGVLLAAGPRFGVQGAFERFLRLPYTHGEPELRLAVKGIAAAT
HHCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHH
AALTPRAADPLNPLNMSIR
HHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATRVIGAAGLARDLGNWRSAGEDEHGRRSRPAYLALAEGIRLLIHDGRAPLGVALPSER
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCEEEECCCCC
DLAATLGVSRTTITSTYALLREHGYLISRQGSRSTVALPPAVPNDGSRAARGILATMVPA
CHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCC
ELTTVDLTYAAMTAPEEMHEAYATALQALPAYLGTHGMDPVGMRALREALARRYTARGLP
HHEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
TDPDQILVTLGAQHGLRLLLNVLTAPAARVLIEHPTYPNAIEAIRDVGARPIPVPLLLEN
CCHHHEEEEECCHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHCCCCCCCCEEEECC
PSAGWDLDGLRSAARQTAATLAYLVPDFNNPTGMLLDAEGRAELAAIARDTRMTVVVDES
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCEEEEEEECC
MVDLGLDVDTMPPPVAAFGKGAEIITIGSASKSFWGGLRVGWIRTNQSLITKLLGIRSTV
HHHCCCCCCCCCCCHHHHCCCCEEEEECCCCCHHCCCEEEEEEECCHHHHHHHHHCCHHH
DLGTPVMDQLATVHLLEHAETILERRRAQLRSQRAALLDAIAEELPDWRVQPGAGGMSVW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHH
AQLPAPVSTALAATAPNHGVLLAAGPRFGVQGAFERFLRLPYTHGEPELRLAVKGIAAAT
HHCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHH
AALTPRAADPLNPLNMSIR
HHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]