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The map label for this gene is 54027328

Identifier: 54027328

GI number: 54027328

Start: 5660178

End: 5660741

Strand: Reverse

Name: 54027328

Synonym: nfa53540

Alternate gene names: NA

Gene position: 5660741-5660178 (Counterclockwise)

Preceding gene: 54027333

Following gene: 54027327

Centisome position: 94.01

GC content: 70.39

Gene sequence:

>564_bases
ATGAGCAAGAGCGGAGCCATCCTCTCCCGGTCGGACGCCCGGCGCGACACCGTCGTCGACGCGGCCATCGCCGAGTTCGC
CCGCACCGGCTACCACGGCACGCCGATCAGCACGGTGGCGGCGGCGGCGCAGATCTCCCCCGCGTACGTCTTCAAGTTGT
TCCCGAGCAAGGTCACGCTGTTCGTCGCCGCGCTCGACCGCTGTTTCGAGCGGATCGAGAGTGCGCTCGCGGCCGGCGCG
GCCCGGGTGCCCGGTGCGAAGCCCGACGAGATCCTGTACGAGATGGGCGGCGCCTACGCCGAACTCATCGGCGACCGGAA
TCTGCTCATGCTCCAGGTGCACGCCCAGTCCGTCGTCGACGTCCCGGAGATCGGGGAGGCGATGCGGCGCGGTATCGCCC
GGGTGACCGAACTGGCCAAACAGCGATCCGGCGCCGAGGACGCCGCGGTGCAACGCTTCATCGCCTTCGGGCAGCTCTGT
CACCTGATCACCACCCTCGGGCTCGACGGGGACGCCAGTCCCTGGGCGGCGATCCTCACCGAGGGCATCCGGCACCCCGG
CTGA

Upstream 100 bases:

>100_bases
AACCAGGTCCGACGGCCCGCGTGTGCGCGGTCACGTCCGGGTGAGGCAACCCGCGGGGAGGTGTTGTCATTCCATCGGTA
GTGAGTGTACAGTCACTCAC

Downstream 100 bases:

>100_bases
CCCGTTCCGACCATGCCCCTTCGGGGGCTTTTCTTCGACCCATCGAGTGATTGACCAGTCACACACTAGGAGAGAATCAT
GATCACCACAGCCACCGAAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSKSGAILSRSDARRDTVVDAAIAEFARTGYHGTPISTVAAAAQISPAYVFKLFPSKVTLFVAALDRCFERIESALAAGA
ARVPGAKPDEILYEMGGAYAELIGDRNLLMLQVHAQSVVDVPEIGEAMRRGIARVTELAKQRSGAEDAAVQRFIAFGQLC
HLITTLGLDGDASPWAAILTEGIRHPG

Sequences:

>Translated_187_residues
MSKSGAILSRSDARRDTVVDAAIAEFARTGYHGTPISTVAAAAQISPAYVFKLFPSKVTLFVAALDRCFERIESALAAGA
ARVPGAKPDEILYEMGGAYAELIGDRNLLMLQVHAQSVVDVPEIGEAMRRGIARVTELAKQRSGAEDAAVQRFIAFGQLC
HLITTLGLDGDASPWAAILTEGIRHPG
>Mature_186_residues
SKSGAILSRSDARRDTVVDAAIAEFARTGYHGTPISTVAAAAQISPAYVFKLFPSKVTLFVAALDRCFERIESALAAGAA
RVPGAKPDEILYEMGGAYAELIGDRNLLMLQVHAQSVVDVPEIGEAMRRGIARVTELAKQRSGAEDAAVQRFIAFGQLCH
LITTLGLDGDASPWAAILTEGIRHPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19851; Mature: 19720

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSGAILSRSDARRDTVVDAAIAEFARTGYHGTPISTVAAAAQISPAYVFKLFPSKVTL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
FVAALDRCFERIESALAAGAARVPGAKPDEILYEMGGAYAELIGDRNLLMLQVHAQSVVD
HHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHCHHHHHHHCCCCEEEEEECHHHHCC
VPEIGEAMRRGIARVTELAKQRSGAEDAAVQRFIAFGQLCHLITTLGLDGDASPWAAILT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
EGIRHPG
HHHCCCC
>Mature Secondary Structure 
SKSGAILSRSDARRDTVVDAAIAEFARTGYHGTPISTVAAAAQISPAYVFKLFPSKVTL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
FVAALDRCFERIESALAAGAARVPGAKPDEILYEMGGAYAELIGDRNLLMLQVHAQSVVD
HHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHCHHHHHHHCCCCEEEEEECHHHHCC
VPEIGEAMRRGIARVTELAKQRSGAEDAAVQRFIAFGQLCHLITTLGLDGDASPWAAILT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
EGIRHPG
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA