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The map label for this gene is nagD [H]

Identifier: 54027323

GI number: 54027323

Start: 5656143

End: 5656940

Strand: Reverse

Name: nagD [H]

Synonym: nfa53490

Alternate gene names: 54027323

Gene position: 5656940-5656143 (Counterclockwise)

Preceding gene: 54027325

Following gene: 54027320

Centisome position: 93.95

GC content: 68.42

Gene sequence:

>798_bases
GTGACCATCGATGACGAGCCGATCCTGTCCTACCTGACCGATATGGACGGCGTGCTGGTGAGCGAGGACCATCTGGTGCC
GGGCGCCGATGAGTTCCTCGCCGAATTGCGCGCGAACGAGACGCCGTTCCTCGTGCTCACCAACAACTCCATCCGCACCC
CGCGCGACTTGCAGGCCCGGCTGCGCACCACCGGCCTGGACATCCCGGAGGAGTCCATCTGGACCTCCGCGCTGGCCACC
GCGACCTTCCTCAACGACCAGCGCCCGAACGGCACCGCGTACGTGGTGGGGGAGTCCGGCCTCACCACGGCGCTGCACGA
GATCGGTTACGTGCTCACCGACAGCGACCCCGACTACGTCGTGCTCGGCGAGACCCGCACCTACTCCTTCGAGGCCATCA
CCACCGCCATCCGCCTGGTCGAACGCGGCGCCCGTTTCATCGCCACCAATCCGGACGCCACCGGCCCGTCGCGCGAGGGG
GTACTGCCTGCGACCGGCTCGGTCGCCGCCCTGATCACCCGCGCCACCGGACGCGACCCGTACTACGTCGGCAAACCCAA
CCCGCTGATGATGCGCTCGGCGCTGCGCCGCCTCGGCGCCCATTCCCAGTCGACGGTGATGATCGGCGACCGCATGGACA
CCGACGTGATCTCCGGTCTGGAGGCGGGCATGCGCACGATCCTGGTCACCTCGGGCATCTCCACCCGTGCCGCCGTCGAG
CAGTACCCCTACCGCCCGACCATGGTCATCGACTCGGTCGCCGACCTGGTGGGACGCACGAAGAATCCCTTCGGCTGA

Upstream 100 bases:

>100_bases
CGCTGCGGCACGTCCACACCGAGTCGATCCACGGCGACTCCGACGCGCGCGTCTGGAACAGCAATCCCACCCGCGGCATC
CTATGACGGACAATTGCCGG

Downstream 100 bases:

>100_bases
GCCCGCCCCATCCCCTCCCGATCTCGATGCCGGGCCCGCCGAGCAGCGCCGGATCAGCGGGAAGGCCGGCACCCTGACCG
TCACTCCTTCTCCAGGGCCT

Product: putative N-acetylglucosamine metabolism protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTIDDEPILSYLTDMDGVLVSEDHLVPGADEFLAELRANETPFLVLTNNSIRTPRDLQARLRTTGLDIPEESIWTSALAT
ATFLNDQRPNGTAYVVGESGLTTALHEIGYVLTDSDPDYVVLGETRTYSFEAITTAIRLVERGARFIATNPDATGPSREG
VLPATGSVAALITRATGRDPYYVGKPNPLMMRSALRRLGAHSQSTVMIGDRMDTDVISGLEAGMRTILVTSGISTRAAVE
QYPYRPTMVIDSVADLVGRTKNPFG

Sequences:

>Translated_265_residues
MTIDDEPILSYLTDMDGVLVSEDHLVPGADEFLAELRANETPFLVLTNNSIRTPRDLQARLRTTGLDIPEESIWTSALAT
ATFLNDQRPNGTAYVVGESGLTTALHEIGYVLTDSDPDYVVLGETRTYSFEAITTAIRLVERGARFIATNPDATGPSREG
VLPATGSVAALITRATGRDPYYVGKPNPLMMRSALRRLGAHSQSTVMIGDRMDTDVISGLEAGMRTILVTSGISTRAAVE
QYPYRPTMVIDSVADLVGRTKNPFG
>Mature_264_residues
TIDDEPILSYLTDMDGVLVSEDHLVPGADEFLAELRANETPFLVLTNNSIRTPRDLQARLRTTGLDIPEESIWTSALATA
TFLNDQRPNGTAYVVGESGLTTALHEIGYVLTDSDPDYVVLGETRTYSFEAITTAIRLVERGARFIATNPDATGPSREGV
LPATGSVAALITRATGRDPYYVGKPNPLMMRSALRRLGAHSQSTVMIGDRMDTDVISGLEAGMRTILVTSGISTRAAVEQ
YPYRPTMVIDSVADLVGRTKNPFG

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI10092677, Length=269, Percent_Identity=31.5985130111524, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI108796653, Length=287, Percent_Identity=28.2229965156794, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI14149777, Length=233, Percent_Identity=31.7596566523605, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI269847098, Length=233, Percent_Identity=25.3218884120172, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI1786890, Length=249, Percent_Identity=43.7751004016064, Blast_Score=225, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17562458, Length=283, Percent_Identity=29.6819787985866, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17560956, Length=283, Percent_Identity=29.6819787985866, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17558880, Length=283, Percent_Identity=29.6819787985866, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI193210059, Length=256, Percent_Identity=30.078125, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562356, Length=232, Percent_Identity=31.8965517241379, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI86563050, Length=245, Percent_Identity=30.6122448979592, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71984613, Length=266, Percent_Identity=27.4436090225564, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17557870, Length=255, Percent_Identity=25.4901960784314, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6319965, Length=285, Percent_Identity=27.3684210526316, Blast_Score=98, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24666141, Length=255, Percent_Identity=29.8039215686275, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24656326, Length=253, Percent_Identity=24.901185770751, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24656330, Length=267, Percent_Identity=26.9662921348315, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI19920940, Length=224, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24666137, Length=257, Percent_Identity=26.8482490272374, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI22026920, Length=239, Percent_Identity=23.8493723849372, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 28696; Mature: 28565

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDDEPILSYLTDMDGVLVSEDHLVPGADEFLAELRANETPFLVLTNNSIRTPRDLQAR
CCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
LRTTGLDIPEESIWTSALATATFLNDQRPNGTAYVVGESGLTTALHEIGYVLTDSDPDYV
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCCEE
VLGETRTYSFEAITTAIRLVERGARFIATNPDATGPSREGVLPATGSVAALITRATGRDP
EEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
YYVGKPNPLMMRSALRRLGAHSQSTVMIGDRMDTDVISGLEAGMRTILVTSGISTRAAVE
EEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHEEEEEECCCCHHHHHH
QYPYRPTMVIDSVADLVGRTKNPFG
HCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TIDDEPILSYLTDMDGVLVSEDHLVPGADEFLAELRANETPFLVLTNNSIRTPRDLQAR
CCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
LRTTGLDIPEESIWTSALATATFLNDQRPNGTAYVVGESGLTTALHEIGYVLTDSDPDYV
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCCEE
VLGETRTYSFEAITTAIRLVERGARFIATNPDATGPSREGVLPATGSVAALITRATGRDP
EEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
YYVGKPNPLMMRSALRRLGAHSQSTVMIGDRMDTDVISGLEAGMRTILVTSGISTRAAVE
EEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHEEEEEECCCCHHHHHH
QYPYRPTMVIDSVADLVGRTKNPFG
HCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]