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The map label for this gene is fecI [C]

Identifier: 54027253

GI number: 54027253

Start: 5580444

End: 5581328

Strand: Reverse

Name: fecI [C]

Synonym: nfa52790

Alternate gene names: 54027253

Gene position: 5581328-5580444 (Counterclockwise)

Preceding gene: 54027254

Following gene: 54027252

Centisome position: 92.69

GC content: 72.66

Gene sequence:

>885_bases
GTGGAACCGGACGGATTGCGCGAGTTCCAGGCGCATCGCCCGCGCCTGTTCGCACTCGCCTACCGGATGCTCGGCTCGGC
GACCGAGGCCGAGGACGCCGTGCAGGAGACCTACCTGCGCTGGGCGGGCGCCGATCGGTCCCAGATCCGCACGCCCGAGG
CGTGGTTGACCACCGCGGTGGTGAATCTGTGCCGCACGTGGCTGGTCTCCGCGCGGGCCCGCCGGGAGAGCTATGTGGGA
CCGTGGCTGCCCGAACCGGTGCCGACCGCGGAACTCGGCCCGCTGGAGACCGTCGAACTGCGCGAGTCGGTGTCGCTGGC
GCTGCTCACCGCGCTCGAGCGGTTGAACCCGCTCGAGCGCGCGGTGTTCGTGCTGCACGCGGCCTTCGGCTACCCCCACC
GCGAGATCGCCGAGATGCTCGACGTGTCCGACAGTGCCGCGCAGCAGGCCTATCACCGGGCGACGCAGCGGGTCCGGTTG
GGCCGCAACCGTTTCGAGGTCTCCGCCGAGCGGGCCCGCGCGCTGCTCGAACGGTTCCTGGTCGCCGCGAGTACCGGTGA
CGTGGCCGCGCTGCGCAGCCTGCTCACCGCCGACGCCACCGCCACCGCCGACGGTGGCGGTGTGATCAACGCGGCCCGCC
GTCCGGTCGAGGGCGCCGACCGGGTCGCCCGCTACCTGCTCGGCCTGTTTCGCAGGCAGGTGCCCGGCATGGTGATCGGC
GTCGAAGATGCCAACGGCGCGCCCGCGCTGGTGGTCCGGGTGGCGGGCGCGCCGATGCTGGTGGTGGGTATCGACTACAC
CGAGCACGGCATCGCCGCGGTGCGGCTGGTGGTGAATCCGGCCAAGCTGGCCGCGTTCGGGCGGCTGAGCCCCGATTCGG
TGTGA

Upstream 100 bases:

>100_bases
CGATCCGCGCGTCCAGTGCCCGGCTGCGGCTGCGCAGGCCGGGCGGCAGGCGCACCACGCCGGAGGATCTGGAACTCTGA
GCGCAGCGGCGGGAGGTGAC

Downstream 100 bases:

>100_bases
CGTAGCTCATCGCGGGGGCGGTCAGATTTCCGGCGCCTGCCCGGTCTGAGGGGTATCGGCGAACGGAAGGAGCCTCATCA
TGACCGGACAGCATCGGATC

Product: putative sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor; ECF-Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; ECF Family RNA Polymerase Sigma Factor; ECF Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase; Sigma-70 Factor; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma-70-Like Factor; RNA Polymerase ECF-Type Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MEPDGLREFQAHRPRLFALAYRMLGSATEAEDAVQETYLRWAGADRSQIRTPEAWLTTAVVNLCRTWLVSARARRESYVG
PWLPEPVPTAELGPLETVELRESVSLALLTALERLNPLERAVFVLHAAFGYPHREIAEMLDVSDSAAQQAYHRATQRVRL
GRNRFEVSAERARALLERFLVAASTGDVAALRSLLTADATATADGGGVINAARRPVEGADRVARYLLGLFRRQVPGMVIG
VEDANGAPALVVRVAGAPMLVVGIDYTEHGIAAVRLVVNPAKLAAFGRLSPDSV

Sequences:

>Translated_294_residues
MEPDGLREFQAHRPRLFALAYRMLGSATEAEDAVQETYLRWAGADRSQIRTPEAWLTTAVVNLCRTWLVSARARRESYVG
PWLPEPVPTAELGPLETVELRESVSLALLTALERLNPLERAVFVLHAAFGYPHREIAEMLDVSDSAAQQAYHRATQRVRL
GRNRFEVSAERARALLERFLVAASTGDVAALRSLLTADATATADGGGVINAARRPVEGADRVARYLLGLFRRQVPGMVIG
VEDANGAPALVVRVAGAPMLVVGIDYTEHGIAAVRLVVNPAKLAAFGRLSPDSV
>Mature_294_residues
MEPDGLREFQAHRPRLFALAYRMLGSATEAEDAVQETYLRWAGADRSQIRTPEAWLTTAVVNLCRTWLVSARARRESYVG
PWLPEPVPTAELGPLETVELRESVSLALLTALERLNPLERAVFVLHAAFGYPHREIAEMLDVSDSAAQQAYHRATQRVRL
GRNRFEVSAERARALLERFLVAASTGDVAALRSLLTADATATADGGGVINAARRPVEGADRVARYLLGLFRRQVPGMVIG
VEDANGAPALVVRVAGAPMLVVGIDYTEHGIAAVRLVVNPAKLAAFGRLSPDSV

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31982; Mature: 31982

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPDGLREFQAHRPRLFALAYRMLGSATEAEDAVQETYLRWAGADRSQIRTPEAWLTTAV
CCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
VNLCRTWLVSARARRESYVGPWLPEPVPTAELGPLETVELRESVSLALLTALERLNPLER
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
AVFVLHAAFGYPHREIAEMLDVSDSAAQQAYHRATQRVRLGRNRFEVSAERARALLERFL
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VAASTGDVAALRSLLTADATATADGGGVINAARRPVEGADRVARYLLGLFRRQVPGMVIG
HHCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEE
VEDANGAPALVVRVAGAPMLVVGIDYTEHGIAAVRLVVNPAKLAAFGRLSPDSV
EECCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHEECHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEPDGLREFQAHRPRLFALAYRMLGSATEAEDAVQETYLRWAGADRSQIRTPEAWLTTAV
CCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
VNLCRTWLVSARARRESYVGPWLPEPVPTAELGPLETVELRESVSLALLTALERLNPLER
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
AVFVLHAAFGYPHREIAEMLDVSDSAAQQAYHRATQRVRLGRNRFEVSAERARALLERFL
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VAASTGDVAALRSLLTADATATADGGGVINAARRPVEGADRVARYLLGLFRRQVPGMVIG
HHCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEE
VEDANGAPALVVRVAGAPMLVVGIDYTEHGIAAVRLVVNPAKLAAFGRLSPDSV
EECCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHEECHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA