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The map label for this gene is ndh [H]

Identifier: 54027252

GI number: 54027252

Start: 5579276

End: 5580364

Strand: Reverse

Name: ndh [H]

Synonym: nfa52780

Alternate gene names: 54027252

Gene position: 5580364-5579276 (Counterclockwise)

Preceding gene: 54027253

Following gene: 54027251

Centisome position: 92.68

GC content: 75.02

Gene sequence:

>1089_bases
ATGACCGGACAGCATCGGATCGTCGTTCTGGGCGCGGGGTACGCGGGCCTGTCGGCGGCGCGGCGGCTGGCGAAGAAGGC
GCGCGGCGCCCAGGTGACGGTGGTGGACGCGCGGGCGCAGTTCATCGAACGGGTGCGGCTGCACCAGCGGGTGGCCGGGC
AGCCGCTGCGGCAGTGGGAGCTGGCGCGGGTGCTCGCCGACCAGGGCATCGACTTCGTGTGTGCCCGTGCCACCGACCTC
GACCCGGCCGCCCGCACCGTCGGCCTCGACACCGGCCGGGTGCTGAGCTACGACTCGCTGATCTACGCGCTCGGCAGCAC
CGCCCCGCACGACGTTCCGGGTGTGGCCGAGTTCGCCCGGTCGGCGGACACCCCGGACGCCGCGGACTGGCAGGTCGAGG
GCGCGGGCCCCGTAGCGATCGTGGGCACCGGCGCGACCGGCATCGAACTGTCCACCGAACTCGCCGAATCGCACCCGGGC
ACCCGGGTGCTGTTGCTCGGCACCGACGAGCCGGGGGCCTGGCTCGGGACCGAGGCGGTGGCGCACATCCGCGCGGTGCT
GGACCGGCTGGGCGTCGAGGTGCGAACCGACGTCAAGGTGGTGGAGGTGACGCCGCAGGGTCCGCGCCTGGCCGACGGCA
CCGTCGTCCCCGCGGCCGCGACGGTGTGGGCCACCGGTTTCGCGGTGCCCGACCTGGCGGCCCGCGCCGGCATCGCCGTG
GACGCGCTCGGCCGCGTCCGCACGGACCGGTTCCTGCGCTCGCTCTCGCACCCGGACATCCACGCCGCGGGTGACTGCGC
GCTGATCGAGGGCCCCGGCGGCCGTGAATTGCGGATGGCCTGCGCGACCGCCCTGCCCACCGGCAAACACGCCGCCGACA
CGGTCGCCGCGCGCCTGCGCGGCGCGGAGCCGGCCGAACTGCGCTTCCGCTACTACCTGCAGTGCCTGAGCTTGGGCAGG
CAGGACGGCCTCATCCACCTGTTGCGCGCCGACGACACTCCGGGCCGTTTCATGCTGCGGGGCCGCGCGGCGGCCTTGGT
GAAGGAGCAGGTGGTCCGCAGCGCGGTGGTCGCGGCGGGACTGCGCTGA

Upstream 100 bases:

>100_bases
CTGAGCCCCGATTCGGTGTGACGTAGCTCATCGCGGGGGCGGTCAGATTTCCGGCGCCTGCCCGGTCTGAGGGGTATCGG
CGAACGGAAGGAGCCTCATC

Downstream 100 bases:

>100_bases
CCCGTCCGTCAACTGTAGGTTGACGCACCTGAGGTCGTCAACCTACAGTTGACGCATGACCACACCGCAGATCCGTCTCG
ACGACCTCATCACCGCCATC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MTGQHRIVVLGAGYAGLSAARRLAKKARGAQVTVVDARAQFIERVRLHQRVAGQPLRQWELARVLADQGIDFVCARATDL
DPAARTVGLDTGRVLSYDSLIYALGSTAPHDVPGVAEFARSADTPDAADWQVEGAGPVAIVGTGATGIELSTELAESHPG
TRVLLLGTDEPGAWLGTEAVAHIRAVLDRLGVEVRTDVKVVEVTPQGPRLADGTVVPAAATVWATGFAVPDLAARAGIAV
DALGRVRTDRFLRSLSHPDIHAAGDCALIEGPGGRELRMACATALPTGKHAADTVAARLRGAEPAELRFRYYLQCLSLGR
QDGLIHLLRADDTPGRFMLRGRAAALVKEQVVRSAVVAAGLR

Sequences:

>Translated_362_residues
MTGQHRIVVLGAGYAGLSAARRLAKKARGAQVTVVDARAQFIERVRLHQRVAGQPLRQWELARVLADQGIDFVCARATDL
DPAARTVGLDTGRVLSYDSLIYALGSTAPHDVPGVAEFARSADTPDAADWQVEGAGPVAIVGTGATGIELSTELAESHPG
TRVLLLGTDEPGAWLGTEAVAHIRAVLDRLGVEVRTDVKVVEVTPQGPRLADGTVVPAAATVWATGFAVPDLAARAGIAV
DALGRVRTDRFLRSLSHPDIHAAGDCALIEGPGGRELRMACATALPTGKHAADTVAARLRGAEPAELRFRYYLQCLSLGR
QDGLIHLLRADDTPGRFMLRGRAAALVKEQVVRSAVVAAGLR
>Mature_361_residues
TGQHRIVVLGAGYAGLSAARRLAKKARGAQVTVVDARAQFIERVRLHQRVAGQPLRQWELARVLADQGIDFVCARATDLD
PAARTVGLDTGRVLSYDSLIYALGSTAPHDVPGVAEFARSADTPDAADWQVEGAGPVAIVGTGATGIELSTELAESHPGT
RVLLLGTDEPGAWLGTEAVAHIRAVLDRLGVEVRTDVKVVEVTPQGPRLADGTVVPAAATVWATGFAVPDLAARAGIAVD
ALGRVRTDRFLRSLSHPDIHAAGDCALIEGPGGRELRMACATALPTGKHAADTVAARLRGAEPAELRFRYYLQCLSLGRQ
DGLIHLLRADDTPGRFMLRGRAAALVKEQVVRSAVVAAGLR

Specific function: Transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Does not couple the redox reaction to proton translocation [H]

COG id: COG1252

COG function: function code C; NADH dehydrogenase, FAD-containing subunit

Gene ontology:

Cell location: Cell membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADH dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1787352, Length=404, Percent_Identity=26.7326732673267, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.6.99.3 [H]

Molecular weight: Translated: 38142; Mature: 38011

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGQHRIVVLGAGYAGLSAARRLAKKARGAQVTVVDARAQFIERVRLHQRVAGQPLRQWE
CCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHH
LARVLADQGIDFVCARATDLDPAARTVGLDTGRVLSYDSLIYALGSTAPHDVPGVAEFAR
HHHHHHHCCCCEEEEECCCCCHHHHEECCCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHH
SADTPDAADWQVEGAGPVAIVGTGATGIELSTELAESHPGTRVLLLGTDEPGAWLGTEAV
CCCCCCCCCEEECCCCCEEEEECCCCCCEEEHHHHHCCCCCEEEEEECCCCCCCHHHHHH
AHIRAVLDRLGVEVRTDVKVVEVTPQGPRLADGTVVPAAATVWATGFAVPDLAARAGIAV
HHHHHHHHHCCCEEECCEEEEEECCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHCCCHH
DALGRVRTDRFLRSLSHPDIHAAGDCALIEGPGGRELRMACATALPTGKHAADTVAARLR
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHC
GAEPAELRFRYYLQCLSLGRQDGLIHLLRADDTPGRFMLRGRAAALVKEQVVRSAVVAAG
CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHC
LR
CC
>Mature Secondary Structure 
TGQHRIVVLGAGYAGLSAARRLAKKARGAQVTVVDARAQFIERVRLHQRVAGQPLRQWE
CCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHH
LARVLADQGIDFVCARATDLDPAARTVGLDTGRVLSYDSLIYALGSTAPHDVPGVAEFAR
HHHHHHHCCCCEEEEECCCCCHHHHEECCCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHH
SADTPDAADWQVEGAGPVAIVGTGATGIELSTELAESHPGTRVLLLGTDEPGAWLGTEAV
CCCCCCCCCEEECCCCCEEEEECCCCCCEEEHHHHHCCCCCEEEEEECCCCCCCHHHHHH
AHIRAVLDRLGVEVRTDVKVVEVTPQGPRLADGTVVPAAATVWATGFAVPDLAARAGIAV
HHHHHHHHHCCCEEECCEEEEEECCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHCCCHH
DALGRVRTDRFLRSLSHPDIHAAGDCALIEGPGGRELRMACATALPTGKHAADTVAARLR
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHC
GAEPAELRFRYYLQCLSLGRQDGLIHLLRADDTPGRFMLRGRAAALVKEQVVRSAVVAAG
CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHC
LR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6265208; 8905232; 9278503 [H]