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The map label for this gene is clpX2

Identifier: 54027251

GI number: 54027251

Start: 5578489

End: 5579220

Strand: Reverse

Name: clpX2

Synonym: nfa52770

Alternate gene names: NA

Gene position: 5579220-5578489 (Counterclockwise)

Preceding gene: 54027252

Following gene: 54027250

Centisome position: 92.66

GC content: 69.67

Gene sequence:

>732_bases
ATGACCACACCGCAGATCCGTCTCGACGACCTCATCACCGCCATCAAACGAGCCAGGCCCGACAACGTGTTGGAACAGCT
CTCCGACGCCGTGGTCGCGGCGAACCGTCTCGGCGAGGTGGCCGACCATCTGATCGGCCACTTCGTCGACCAGGCTCGTC
GCTCCGGGGCGTCCTGGACCGACATCGGCGCCAGCATGGGCGTGTCCAAGCAGGCCGCCCAGAAGCGTTTCGTGCCGAAG
GGGCCCGCCGCCGGGGGCATCGACCCCAACGAGGGGTTCGCCCGCTTCACTCCGCGTGCCCAGCAGGTCGTCATGGCGTC
CCAGGAAGCGGCTCGGCTGTCCGGGCACGCCGAGATCAGCGCCGCGCACCTGATCCTCGGACTGATGAGCCAGCCGGACG
CGCTGGCCATGCGGGAGATCACCGCGCGCGGCGTCACCGAGGACGCGCTGCGCACGGCGGCGGTCGCGGCCTTCCCGCCC
GCGCCGAGCGAGAAGCCCGCCGACAGCGGCTTGATCCCGTTCGCGAGCGACGCCAAGAAGGTCCTCGAGCTGACCTACCG
CGAGGCGCTTCGGCTGGGCCACAACTACATCGGCACCGAACACATCCTGCTCGCGTTGCTCGAGGAGGAGCACGGCGCGG
GCCCGCTCAGCGGTCTCGGCATCGACAAGGAGCAGACCGAGGCGCACCTGGTGGAGGTGCTGTCGCAGCTCGTGGCGAAG
GAGTCTTCCTGA

Upstream 100 bases:

>100_bases
GAGCAGGTGGTCCGCAGCGCGGTGGTCGCGGCGGGACTGCGCTGACCCGTCCGTCAACTGTAGGTTGACGCACCTGAGGT
CGTCAACCTACAGTTGACGC

Downstream 100 bases:

>100_bases
CGCTGCCCGTTAAGCTATAGCAATGGCGGATGAGACGGCCGAGGATTCCGACCTGGTCGCGGGGGAACGCCGGATCGACC
TGCTGCGTGCGCTGTCGTAC

Product: putative Clp protease subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTTPQIRLDDLITAIKRARPDNVLEQLSDAVVAANRLGEVADHLIGHFVDQARRSGASWTDIGASMGVSKQAAQKRFVPK
GPAAGGIDPNEGFARFTPRAQQVVMASQEAARLSGHAEISAAHLILGLMSQPDALAMREITARGVTEDALRTAAVAAFPP
APSEKPADSGLIPFASDAKKVLELTYREALRLGHNYIGTEHILLALLEEEHGAGPLSGLGIDKEQTEAHLVEVLSQLVAK
ESS

Sequences:

>Translated_243_residues
MTTPQIRLDDLITAIKRARPDNVLEQLSDAVVAANRLGEVADHLIGHFVDQARRSGASWTDIGASMGVSKQAAQKRFVPK
GPAAGGIDPNEGFARFTPRAQQVVMASQEAARLSGHAEISAAHLILGLMSQPDALAMREITARGVTEDALRTAAVAAFPP
APSEKPADSGLIPFASDAKKVLELTYREALRLGHNYIGTEHILLALLEEEHGAGPLSGLGIDKEQTEAHLVEVLSQLVAK
ESS
>Mature_242_residues
TTPQIRLDDLITAIKRARPDNVLEQLSDAVVAANRLGEVADHLIGHFVDQARRSGASWTDIGASMGVSKQAAQKRFVPKG
PAAGGIDPNEGFARFTPRAQQVVMASQEAARLSGHAEISAAHLILGLMSQPDALAMREITARGVTEDALRTAAVAAFPPA
PSEKPADSGLIPFASDAKKVLELTYREALRLGHNYIGTEHILLALLEEEHGAGPLSGLGIDKEQTEAHLVEVLSQLVAKE
SS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family. ClpC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004176
- InterPro:   IPR023150 [H]

Pfam domain/function: PF02861 Clp_N [H]

EC number: NA

Molecular weight: Translated: 25803; Mature: 25671

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPQIRLDDLITAIKRARPDNVLEQLSDAVVAANRLGEVADHLIGHFVDQARRSGASWT
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
DIGASMGVSKQAAQKRFVPKGPAAGGIDPNEGFARFTPRAQQVVMASQEAARLSGHAEIS
HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCHHHH
AAHLILGLMSQPDALAMREITARGVTEDALRTAAVAAFPPAPSEKPADSGLIPFASDAKK
HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
VLELTYREALRLGHNYIGTEHILLALLEEEHGAGPLSGLGIDKEQTEAHLVEVLSQLVAK
HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
ESS
CCC
>Mature Secondary Structure 
TTPQIRLDDLITAIKRARPDNVLEQLSDAVVAANRLGEVADHLIGHFVDQARRSGASWT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
DIGASMGVSKQAAQKRFVPKGPAAGGIDPNEGFARFTPRAQQVVMASQEAARLSGHAEIS
HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCHHHH
AAHLILGLMSQPDALAMREITARGVTEDALRTAAVAAFPPAPSEKPADSGLIPFASDAKK
HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
VLELTYREALRLGHNYIGTEHILLALLEEEHGAGPLSGLGIDKEQTEAHLVEVLSQLVAK
HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
ESS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]