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The map label for this gene is 54027245

Identifier: 54027245

GI number: 54027245

Start: 5572602

End: 5573234

Strand: Reverse

Name: 54027245

Synonym: nfa52710

Alternate gene names: NA

Gene position: 5573234-5572602 (Counterclockwise)

Preceding gene: 54027248

Following gene: 54027244

Centisome position: 92.56

GC content: 68.72

Gene sequence:

>633_bases
ATGTCACAGGATGCGAATACGGGACGAATGTATGCCGGGCAACCCGTAGAGGACCGGCAACGCCAGCGGCGTGCGCGTTT
TCTGGAATCAGGACTGACGGTCTTCGCGCGCGACGGATACGCCAACAGCTCGGTGGGCGCCATCTGTAAGGACGCCGGAC
TTTCCTCGCGTCAGTTCTACGAGGAGTTCACCGGCCGCGAGTCCCTGCTGCTCGAGCTCTACGAGCAGATCGACCGGGAA
TCGCGCGACGCCGTGGCCGCAGCCCTGGACAAGAACGCCGAGGGGACCGCGCTGGAGCGGATCGATGCCGCCGTGCGCGC
CTACATCGAGGCCATCGGCTCGGACCCGCGGAAGGCGCGGGTCGTCCTGGTCGAGGTGGTCGGCGCCGGGCCGAAGGTGG
AGAAGTTCCGCCTGGAGCTGCGCCGCGCGTGGGGCGCGTTGCTGGCCAGTGCGACCGAGGACGCCGCTTTGCAGGGCGAG
ATCCCGCCCGGTGACTACGAGATGCGGGTGCTGGCGATCATCGGCGCGGTGAACTACGTCGTCGACTCCTGGAGCGGCAC
GGACCCGCGCCCGCCGCTCGACGACGTGATCCGGGTGCTCAGCCGGGTGATCATGGGGGCGGTGCGGGCCTGA

Upstream 100 bases:

>100_bases
CGGGTGCGCGCGGCGGGCGCGCCGCTCGCCGCGCCCGCCGGTGCGACGAAGGGCCCGATCCATGACGAGGGGTTCCCGGC
CTTCGGTATTGTCTGGCGCA

Downstream 100 bases:

>100_bases
GCGGTATGCAGACGGTTCCGATCCAGGTACCGGACGGCAGCACCGTTCCGGTGCGGCTGATCCCGGCCGAGGGCAGCCAT
CGGCATCCGGTGACACCCGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; AcrR Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcriptional Egulator TetR Family; TetR-Family Regulatory Protein; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSQDANTGRMYAGQPVEDRQRQRRARFLESGLTVFARDGYANSSVGAICKDAGLSSRQFYEEFTGRESLLLELYEQIDRE
SRDAVAAALDKNAEGTALERIDAAVRAYIEAIGSDPRKARVVLVEVVGAGPKVEKFRLELRRAWGALLASATEDAALQGE
IPPGDYEMRVLAIIGAVNYVVDSWSGTDPRPPLDDVIRVLSRVIMGAVRA

Sequences:

>Translated_210_residues
MSQDANTGRMYAGQPVEDRQRQRRARFLESGLTVFARDGYANSSVGAICKDAGLSSRQFYEEFTGRESLLLELYEQIDRE
SRDAVAAALDKNAEGTALERIDAAVRAYIEAIGSDPRKARVVLVEVVGAGPKVEKFRLELRRAWGALLASATEDAALQGE
IPPGDYEMRVLAIIGAVNYVVDSWSGTDPRPPLDDVIRVLSRVIMGAVRA
>Mature_209_residues
SQDANTGRMYAGQPVEDRQRQRRARFLESGLTVFARDGYANSSVGAICKDAGLSSRQFYEEFTGRESLLLELYEQIDRES
RDAVAAALDKNAEGTALERIDAAVRAYIEAIGSDPRKARVVLVEVVGAGPKVEKFRLELRRAWGALLASATEDAALQGEI
PPGDYEMRVLAIIGAVNYVVDSWSGTDPRPPLDDVIRVLSRVIMGAVRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23003; Mature: 22872

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDANTGRMYAGQPVEDRQRQRRARFLESGLTVFARDGYANSSVGAICKDAGLSSRQFY
CCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCHHHHH
EEFTGRESLLLELYEQIDRESRDAVAAALDKNAEGTALERIDAAVRAYIEAIGSDPRKAR
HHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHE
VVLVEVVGAGPKVEKFRLELRRAWGALLASATEDAALQGEIPPGDYEMRVLAIIGAVNYV
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHH
VDSWSGTDPRPPLDDVIRVLSRVIMGAVRA
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQDANTGRMYAGQPVEDRQRQRRARFLESGLTVFARDGYANSSVGAICKDAGLSSRQFY
CCCCCCCCEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCHHHHH
EEFTGRESLLLELYEQIDRESRDAVAAALDKNAEGTALERIDAAVRAYIEAIGSDPRKAR
HHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHE
VVLVEVVGAGPKVEKFRLELRRAWGALLASATEDAALQGEIPPGDYEMRVLAIIGAVNYV
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHH
VDSWSGTDPRPPLDDVIRVLSRVIMGAVRA
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA