| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54027133
Identifier: 54027133
GI number: 54027133
Start: 5459288
End: 5460385
Strand: Reverse
Name: 54027133
Synonym: nfa51590
Alternate gene names: NA
Gene position: 5460385-5459288 (Counterclockwise)
Preceding gene: 54027134
Following gene: 54027132
Centisome position: 90.69
GC content: 75.14
Gene sequence:
>1098_bases GTGAGTCCCGACCACGACCAGCCCGCCGAGCGCCGCGAACCACTCGAGGCCGACAACCCCGCCGCCGACACCACCGCCGA CCTGACCGTCGCCCCGCCCGCCGCCGACGCGACAGCGGCCCCCACCGCGGATTCGGCCGTCCCCGTGCAGTCGGCGACCG AAGCAGAGCCGGGGTTCGATCCGGACCGGCCCGCGCCCACCGTCGCCGAGCAGGCCGCGCCGCCGGACGCGCCCGCCGCC GAGCAGGCGGTGGCACCCGACGCGCCCGCCGCCGCGCAGTCGGCACCGACGAGCGCCGAGGAGACCGAGGCCGGTTTCCC GACCATCGATGCCCCGTTCAGTGCGGCCGAAGCCAGGGGCTCCGCCGCTGCCGCTGCCGATTCGCCTGCCGCCGACCGGG CCGCGCGCGCCACCGTGGCGCACACCGAAACCCGTGCGCCGCAGGCTGATTCGCTCGATGCCGACGACGAGGTCGAGACC ATCGTGCATGTGCTGCGGCACGGCGAGGTGCACAACCCCAACGGCATCCTCTACGGCCGGCTGCCCGGCTTCGGGCTCTC GGTCACCGGCCGGGCCCAGGCGGGCGCGGTCGCGCGGGCGCTGGCCGATCACGACATCGCCCTGGTGATCGCCTCGCCGC TGCAGCGCGCGCAGGAGACCGCCGAGCCGATCGCCGCGCAGCACGGGCTGCTCGTGCGCACCGACGAGAACCTCATCGAG GCGGGCAACACCTTCGAGGGCCTGCGCGTGTCGGTGGGCGACGGCGCACTGCGCAAGCCGCGGCACTGGTGGAAGCTGCG CGATCCGTTCACCCCGTCCTGGGGCGAGCCCTACCTGCAGATCGCGCACCGGATGCTGGCCGCGGTGAACAAGGCGCGGG TGGAGGCGGCGGGCCACGAGGCGGTCCTGGTCTCGCACCAGCTGCCGGTCTGGACGCTGCGCCGGTTCCTGCAGGGCCAG CGGCTCTGGCACGACCCGCGCACCCGGCAGTGCTCGCTGGCCTCGCTGACCTCGCTGGTCTACCGCGGCGACACCCTGGT CGACATCGTCTACTCCGAGCCCGCGGGCGGGTCGGATCCCACGGTGCACGGCGCATGA
Upstream 100 bases:
>100_bases TCTCCGCGGCGCTCGACGAGGACGCATTCGCCCGTATCGCCGCAGCCCTGCCCGCCGCCGCTCGCGCGGCCGCGGCCGCC ACCCCCGAAGGATCCCGCGC
Downstream 100 bases:
>100_bases GACGCCCCGCGTCGTTCCCGGCGCACCGGTCCGCGCCGGTGCGGGTCGTGGCGGCTCTGCTCGCGTGCGTGGCGCTGGTC GCCGGGCTGGCGGGCTGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MSPDHDQPAERREPLEADNPAADTTADLTVAPPAADATAAPTADSAVPVQSATEAEPGFDPDRPAPTVAEQAAPPDAPAA EQAVAPDAPAAAQSAPTSAEETEAGFPTIDAPFSAAEARGSAAAAADSPAADRAARATVAHTETRAPQADSLDADDEVET IVHVLRHGEVHNPNGILYGRLPGFGLSVTGRAQAGAVARALADHDIALVIASPLQRAQETAEPIAAQHGLLVRTDENLIE AGNTFEGLRVSVGDGALRKPRHWWKLRDPFTPSWGEPYLQIAHRMLAAVNKARVEAAGHEAVLVSHQLPVWTLRRFLQGQ RLWHDPRTRQCSLASLTSLVYRGDTLVDIVYSEPAGGSDPTVHGA
Sequences:
>Translated_365_residues MSPDHDQPAERREPLEADNPAADTTADLTVAPPAADATAAPTADSAVPVQSATEAEPGFDPDRPAPTVAEQAAPPDAPAA EQAVAPDAPAAAQSAPTSAEETEAGFPTIDAPFSAAEARGSAAAAADSPAADRAARATVAHTETRAPQADSLDADDEVET IVHVLRHGEVHNPNGILYGRLPGFGLSVTGRAQAGAVARALADHDIALVIASPLQRAQETAEPIAAQHGLLVRTDENLIE AGNTFEGLRVSVGDGALRKPRHWWKLRDPFTPSWGEPYLQIAHRMLAAVNKARVEAAGHEAVLVSHQLPVWTLRRFLQGQ RLWHDPRTRQCSLASLTSLVYRGDTLVDIVYSEPAGGSDPTVHGA >Mature_364_residues SPDHDQPAERREPLEADNPAADTTADLTVAPPAADATAAPTADSAVPVQSATEAEPGFDPDRPAPTVAEQAAPPDAPAAE QAVAPDAPAAAQSAPTSAEETEAGFPTIDAPFSAAEARGSAAAAADSPAADRAARATVAHTETRAPQADSLDADDEVETI VHVLRHGEVHNPNGILYGRLPGFGLSVTGRAQAGAVARALADHDIALVIASPLQRAQETAEPIAAQHGLLVRTDENLIEA GNTFEGLRVSVGDGALRKPRHWWKLRDPFTPSWGEPYLQIAHRMLAAVNKARVEAAGHEAVLVSHQLPVWTLRRFLQGQR LWHDPRTRQCSLASLTSLVYRGDTLVDIVYSEPAGGSDPTVHGA
Specific function: Unknown
COG id: COG0406
COG function: function code G; Fructose-2,6-bisphosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: NA
Molecular weight: Translated: 38261; Mature: 38130
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPDHDQPAERREPLEADNPAADTTADLTVAPPAADATAAPTADSAVPVQSATEAEPGFD CCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDRPAPTVAEQAAPPDAPAAEQAVAPDAPAAAQSAPTSAEETEAGFPTIDAPFSAAEARG CCCCCCCHHHHCCCCCCCCHHHHCCCCCCCHHCCCCCCCHHHCCCCCCCCCCCHHHHHCC SAAAAADSPAADRAARATVAHTETRAPQADSLDADDEVETIVHVLRHGEVHNPNGILYGR CHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEC LPGFGLSVTGRAQAGAVARALADHDIALVIASPLQRAQETAEPIAAQHGLLVRTDENLIE CCCCCEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEECCCHHHH AGNTFEGLRVSVGDGALRKPRHWWKLRDPFTPSWGEPYLQIAHRMLAAVNKARVEAAGHE CCCCCCCEEEEECCCCCCCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC AVLVSHQLPVWTLRRFLQGQRLWHDPRTRQCSLASLTSLVYRGDTLVDIVYSEPAGGSDP EEEEECCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCC TVHGA CCCCC >Mature Secondary Structure SPDHDQPAERREPLEADNPAADTTADLTVAPPAADATAAPTADSAVPVQSATEAEPGFD CCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDRPAPTVAEQAAPPDAPAAEQAVAPDAPAAAQSAPTSAEETEAGFPTIDAPFSAAEARG CCCCCCCHHHHCCCCCCCCHHHHCCCCCCCHHCCCCCCCHHHCCCCCCCCCCCHHHHHCC SAAAAADSPAADRAARATVAHTETRAPQADSLDADDEVETIVHVLRHGEVHNPNGILYGR CHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEC LPGFGLSVTGRAQAGAVARALADHDIALVIASPLQRAQETAEPIAAQHGLLVRTDENLIE CCCCCEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEECCCHHHH AGNTFEGLRVSVGDGALRKPRHWWKLRDPFTPSWGEPYLQIAHRMLAAVNKARVEAAGHE CCCCCCCEEEEECCCCCCCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC AVLVSHQLPVWTLRRFLQGQRLWHDPRTRQCSLASLTSLVYRGDTLVDIVYSEPAGGSDP EEEEECCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCC TVHGA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]