| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is mce5A
Identifier: 54027081
GI number: 54027081
Start: 5409126
End: 5410466
Strand: Reverse
Name: mce5A
Synonym: nfa51070
Alternate gene names: NA
Gene position: 5410466-5409126 (Counterclockwise)
Preceding gene: 54027082
Following gene: 54027080
Centisome position: 89.86
GC content: 70.32
Gene sequence:
>1341_bases ATGAGGCAGACCTGGCGGGCCACCGAGAAGCTGCGCGTGCGCGTGCTCGGACTGGTCTTCTTCGTGGTCGTGGCGCTGTT CCTGTGGACGACCGTCGCGATCTACAACAAGCAGTTCACCCGTTCGGTCGAGGTCGAGCTGATCACCGACAGTGTGGGCA ACGCGCTGACCCGCAACGCCGATGTGAAGGTGCGCGGGGTGACTGTCGGCGAGGTCCGCTCCAGCCGCGCGGGCGACGGC GACGTGGTGTTGCGGCTGGCCATCGACCCCGACAAGGCCGAGCAGATCCCGGCCAACGCCACCGCCCGACTGCTGCCCAA GACCCTGTTCGGCGAGCGCTACGTCGACCTGGTGATCCCGGCGGACCCGAGCCCGCAGCGGCTGCGCGACGGGGTGACCC TGCATCAGGACCGCAGCGGCAACGCGATCGAGATCAGCAAGCTGCTCGACGATCTGCTCCCGCTGCTGCAGGCGATCCCG CCGCAGGACCTGGCCGCCACCCTCGGCGCGCTGTCGCAGGCGCTGGCCGGGCAGGGCGCGATGCTCGGCGAGAGCATCGA CAAGCTCGACACCATCTTCCGCGACGTCAACGGCGTGCTGCCGGAGCTGCAGGAAGGGCTGCGCAGCTTCGCCGAAACCG CCGCGATCTACTCCGACGCCGCCCCGCAGCTGGTGACCGCGCTGGACAACCTGCGCACCACCAATGCCACCATCGTGCAG CGGCGCTCCGACATCGACGCTCTGTACGCGACGCTGACTCCCGCCTCGACCCGCACCGCCGACTTCCTGGCGGCCAACCG CGACAACATCATCGACGTGGCCGCCGACTCGCGGCCCGCACTGGAACTGCTGGCCACCTACTCGCCGACCTACGCCTGTG CCATGGCCAATTTCGCGAAGATGAAGCCCCGGATCGACGAGATCTTCGGCAAGGGGACCGACCGGCCCGGCTCCCGGGTC ACCATCGAGCTGACCAACACCCGTGGCCGCTACCTGCCCAACCAGGACGAGCCGCGCTGGCTGGACACCCGCGGCCCGTG GTGCCTGGCCGAGTACCCGCTCGGTGTCGACCCCGGCCAGTACACCGGCGGCTCCGGCAACGACGGCTCGTATCAGCCGC CCACCCGCTACCCGGGTGACCAGGACACCGGCAAGCTCGCGCCGCCGCAGTTCGGGGTGTACCCGGCGCAGGTGCCGACG CTGGCCGGCTCGCCGGGCGAACAGCAGTCGCTCGGCGCGATCTACGGTGCGGCGCACGGTGTTTCCCCCGACGCGGTACC GGGCTGGCTGACCAGGGTCGGTGCGCCCGCGTTCCGCGGCAGCGAGGTGAGCCTGCGATGA
Upstream 100 bases:
>100_bases GCGGTGCGCGCGGCGATCGTGCTGGTCAACGTGCTGGATTTCTTCCTGTCGCTGGCCATCTGGGGCACGACGACCACGGT CCGGGTGGCGGGGTGAGCGC
Downstream 100 bases:
>100_bases AGGAGACGTTGCGCGGCCTGGGCGGGCCGCTGACCAAGCTGGCCGTGTTCGTGGCGGTGACCCTGTTCGTCACCACCGTG CTCGCGCTCTCGATCGCCAA
Product: putative Mce family protein
Products: NA
Alternate protein names: Mce Family Protein; Secreted Protein; Mce Family A; MCE Family Protein; MCE-Family Protein; Mce-Related Protein; MCE-Family; Virulence Factor
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MRQTWRATEKLRVRVLGLVFFVVVALFLWTTVAIYNKQFTRSVEVELITDSVGNALTRNADVKVRGVTVGEVRSSRAGDG DVVLRLAIDPDKAEQIPANATARLLPKTLFGERYVDLVIPADPSPQRLRDGVTLHQDRSGNAIEISKLLDDLLPLLQAIP PQDLAATLGALSQALAGQGAMLGESIDKLDTIFRDVNGVLPELQEGLRSFAETAAIYSDAAPQLVTALDNLRTTNATIVQ RRSDIDALYATLTPASTRTADFLAANRDNIIDVAADSRPALELLATYSPTYACAMANFAKMKPRIDEIFGKGTDRPGSRV TIELTNTRGRYLPNQDEPRWLDTRGPWCLAEYPLGVDPGQYTGGSGNDGSYQPPTRYPGDQDTGKLAPPQFGVYPAQVPT LAGSPGEQQSLGAIYGAAHGVSPDAVPGWLTRVGAPAFRGSEVSLR
Sequences:
>Translated_446_residues MRQTWRATEKLRVRVLGLVFFVVVALFLWTTVAIYNKQFTRSVEVELITDSVGNALTRNADVKVRGVTVGEVRSSRAGDG DVVLRLAIDPDKAEQIPANATARLLPKTLFGERYVDLVIPADPSPQRLRDGVTLHQDRSGNAIEISKLLDDLLPLLQAIP PQDLAATLGALSQALAGQGAMLGESIDKLDTIFRDVNGVLPELQEGLRSFAETAAIYSDAAPQLVTALDNLRTTNATIVQ RRSDIDALYATLTPASTRTADFLAANRDNIIDVAADSRPALELLATYSPTYACAMANFAKMKPRIDEIFGKGTDRPGSRV TIELTNTRGRYLPNQDEPRWLDTRGPWCLAEYPLGVDPGQYTGGSGNDGSYQPPTRYPGDQDTGKLAPPQFGVYPAQVPT LAGSPGEQQSLGAIYGAAHGVSPDAVPGWLTRVGAPAFRGSEVSLR >Mature_446_residues MRQTWRATEKLRVRVLGLVFFVVVALFLWTTVAIYNKQFTRSVEVELITDSVGNALTRNADVKVRGVTVGEVRSSRAGDG DVVLRLAIDPDKAEQIPANATARLLPKTLFGERYVDLVIPADPSPQRLRDGVTLHQDRSGNAIEISKLLDDLLPLLQAIP PQDLAATLGALSQALAGQGAMLGESIDKLDTIFRDVNGVLPELQEGLRSFAETAAIYSDAAPQLVTALDNLRTTNATIVQ RRSDIDALYATLTPASTRTADFLAANRDNIIDVAADSRPALELLATYSPTYACAMANFAKMKPRIDEIFGKGTDRPGSRV TIELTNTRGRYLPNQDEPRWLDTRGPWCLAEYPLGVDPGQYTGGSGNDGSYQPPTRYPGDQDTGKLAPPQFGVYPAQVPT LAGSPGEQQSLGAIYGAAHGVSPDAVPGWLTRVGAPAFRGSEVSLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48095; Mature: 48095
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQTWRATEKLRVRVLGLVFFVVVALFLWTTVAIYNKQFTRSVEVELITDSVGNALTRNA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECHHCHHHHCCC DVKVRGVTVGEVRSSRAGDGDVVLRLAIDPDKAEQIPANATARLLPKTLFGERYVDLVIP CEEEEEEEHHHHHCCCCCCCCEEEEEEECCCHHHHCCCCCHHHHHHHHHCCCCEEEEEEC ADPSPQRLRDGVTLHQDRSGNAIEISKLLDDLLPLLQAIPPQDLAATLGALSQALAGQGA CCCCHHHHHCCCEEEECCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC MLGESIDKLDTIFRDVNGVLPELQEGLRSFAETAAIYSDAAPQLVTALDNLRTTNATIVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH RRSDIDALYATLTPASTRTADFLAANRDNIIDVAADSRPALELLATYSPTYACAMANFAK HHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHH MKPRIDEIFGKGTDRPGSRVTIELTNTRGRYLPNQDEPRWLDTRGPWCLAEYPLGVDPGQ HCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCC YTGGSGNDGSYQPPTRYPGDQDTGKLAPPQFGVYPAQVPTLAGSPGEQQSLGAIYGAAHG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC VSPDAVPGWLTRVGAPAFRGSEVSLR CCCCCCCHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MRQTWRATEKLRVRVLGLVFFVVVALFLWTTVAIYNKQFTRSVEVELITDSVGNALTRNA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECHHCHHHHCCC DVKVRGVTVGEVRSSRAGDGDVVLRLAIDPDKAEQIPANATARLLPKTLFGERYVDLVIP CEEEEEEEHHHHHCCCCCCCCEEEEEEECCCHHHHCCCCCHHHHHHHHHCCCCEEEEEEC ADPSPQRLRDGVTLHQDRSGNAIEISKLLDDLLPLLQAIPPQDLAATLGALSQALAGQGA CCCCHHHHHCCCEEEECCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC MLGESIDKLDTIFRDVNGVLPELQEGLRSFAETAAIYSDAAPQLVTALDNLRTTNATIVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH RRSDIDALYATLTPASTRTADFLAANRDNIIDVAADSRPALELLATYSPTYACAMANFAK HHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHH MKPRIDEIFGKGTDRPGSRVTIELTNTRGRYLPNQDEPRWLDTRGPWCLAEYPLGVDPGQ HCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCC YTGGSGNDGSYQPPTRYPGDQDTGKLAPPQFGVYPAQVPTLAGSPGEQQSLGAIYGAAHG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC VSPDAVPGWLTRVGAPAFRGSEVSLR CCCCCCCHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA