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The map label for this gene is yefJ [C]

Identifier: 54027040

GI number: 54027040

Start: 5365173

End: 5366576

Strand: Reverse

Name: yefJ [C]

Synonym: nfa50660

Alternate gene names: 54027040

Gene position: 5366576-5365173 (Counterclockwise)

Preceding gene: 54027043

Following gene: 54027039

Centisome position: 89.13

GC content: 73.36

Gene sequence:

>1404_bases
ATGCGCCACGATCGATTGCCCGACGGCTTCGGGGTACGGATCGATCCACGGGTACGCGCATACTCCGGCAATCGCATCCT
GATCGGCGGGACGCCCGCCAGGGTGTTGCGCCTGGCGCCGGAGGCCGCCGAGATGATCGGCGACGGGTACCTCGAGGTCA
CCGGACCGAAGTCCGCCGTCGTCGCCCGGCGGCTGCTCGACTCCGGCGTCGCCAACCCGCGCCCGCGCCTGCTGCCTTCC
ACCGACGACGTCACCGTCGTCGTCCCGGTGCACAACAACCCCGAAGGCCTGGCCCGGATGCTGGCGGTGTTGCGCGGCCA
CCACGTCATCGTCGTCGACGACGGCTCCGACCAGCCGGTGCGCATTCCGGAGACCCGTGGCACCCGCTGCCGCGTGACGG
TGCTGCGGCACGACACCGCGCACGGCCCGGCCGCCGCGCGCAACGCCGGACTACGCGCGGCCACAACCGAATTCGTGGCG
TTCCTGGATTCGGACGTGGTGCCGCGCAGCGGCTGGCTCGAGGTGATGCTCGGACACTTCAGCGATCCCGAGGTCGCGCT
GGTGGCCCCGCGCATCGTCGCGCTCGACGCCGAATCGAACGCCCTGGCGCGCTACGAACACACCCGCTCCTCGCTCGATC
TCGGCAGGCGCGAGGCGGCGGTGCACTCGCGCGGGCCGGTGTCCTACGTGCCGAGCGCGGCGCTGCTGGTGCGGCGCCAG
GCGTTGCTGGCCGTGGGCGGCTTCGACGAGTCGATGCGGGTGGCCGAGGACGTGGACCTGTGCTGGCGGCTGGAGCGGGC
GGGCAGGCGGTTGCGCTACGAGCCCGCCGCGCACGTCGCGCACGATCACCGGGTCGCCTTCCGTGCCTGGTTCGGCCGGA
AGGTGTTCTACGGCACCGGGGCCGCGCCGCTGGCCCGCAGGCACGGCCCGGCGGCGGTCTCGCCGCTGTCGCTGCCGTAC
TGGACGGCGCTGGCGGCGGTGCTCTTCGCGACGCTGACCCGGTGGGGACTGCTCGGTGGGCTGGTGGCCCTGGCGACCGC
GCTGGTGCGGTTGCGGCGGGTGTTCGCCGGGCTGGACAACCCGACCAGGATCGCCGCGCTCTATCTCGCGCGCGGGTTCT
TCGCCGGGCTGTGGCGCATCGCCTCGGCGATGTGCAGGCACTACTGGCCGATCACCCTGCTGGCCGTGCTGGTTTCGCGG
CGGGTGCGGCGCATCGCGGTGACGATGGCGGTGGCCGACGGACTGGCCGACTGGTTCACCCATCGCGACGCGGGCGGGCT
CGACCCGGTGCGCTATCTGGTCTACAAGCGGCTCGACGATCTCGCCTACGGCACCGGGCTGTGGGTGGGGGCGGCCCGGG
CGCGCAGCCTCGACGCGCTGCGGCCGGCCTTCTCGCGGCGCTGA

Upstream 100 bases:

>100_bases
CCCGCCGGACGACCCGGGTGTTCTGGCGATTCATGCCGTTTCCGGTCGATTTCGCACACCGATGCTGCCCGCGAGCCGGA
GATTGCCTAGCATGCCAGGA

Downstream 100 bases:

>100_bases
GGACGGCGGGCGGCGGTGACGGACACCCTGATCGTCGGCGGTGGCACCGCCGGTTGCGTGCTCGCCGCCCGGTTGAGCGA
GGACCCCGCGCACACGGTCC

Product: putative glycosyltransferase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MRHDRLPDGFGVRIDPRVRAYSGNRILIGGTPARVLRLAPEAAEMIGDGYLEVTGPKSAVVARRLLDSGVANPRPRLLPS
TDDVTVVVPVHNNPEGLARMLAVLRGHHVIVVDDGSDQPVRIPETRGTRCRVTVLRHDTAHGPAAARNAGLRAATTEFVA
FLDSDVVPRSGWLEVMLGHFSDPEVALVAPRIVALDAESNALARYEHTRSSLDLGRREAAVHSRGPVSYVPSAALLVRRQ
ALLAVGGFDESMRVAEDVDLCWRLERAGRRLRYEPAAHVAHDHRVAFRAWFGRKVFYGTGAAPLARRHGPAAVSPLSLPY
WTALAAVLFATLTRWGLLGGLVALATALVRLRRVFAGLDNPTRIAALYLARGFFAGLWRIASAMCRHYWPITLLAVLVSR
RVRRIAVTMAVADGLADWFTHRDAGGLDPVRYLVYKRLDDLAYGTGLWVGAARARSLDALRPAFSRR

Sequences:

>Translated_467_residues
MRHDRLPDGFGVRIDPRVRAYSGNRILIGGTPARVLRLAPEAAEMIGDGYLEVTGPKSAVVARRLLDSGVANPRPRLLPS
TDDVTVVVPVHNNPEGLARMLAVLRGHHVIVVDDGSDQPVRIPETRGTRCRVTVLRHDTAHGPAAARNAGLRAATTEFVA
FLDSDVVPRSGWLEVMLGHFSDPEVALVAPRIVALDAESNALARYEHTRSSLDLGRREAAVHSRGPVSYVPSAALLVRRQ
ALLAVGGFDESMRVAEDVDLCWRLERAGRRLRYEPAAHVAHDHRVAFRAWFGRKVFYGTGAAPLARRHGPAAVSPLSLPY
WTALAAVLFATLTRWGLLGGLVALATALVRLRRVFAGLDNPTRIAALYLARGFFAGLWRIASAMCRHYWPITLLAVLVSR
RVRRIAVTMAVADGLADWFTHRDAGGLDPVRYLVYKRLDDLAYGTGLWVGAARARSLDALRPAFSRR
>Mature_467_residues
MRHDRLPDGFGVRIDPRVRAYSGNRILIGGTPARVLRLAPEAAEMIGDGYLEVTGPKSAVVARRLLDSGVANPRPRLLPS
TDDVTVVVPVHNNPEGLARMLAVLRGHHVIVVDDGSDQPVRIPETRGTRCRVTVLRHDTAHGPAAARNAGLRAATTEFVA
FLDSDVVPRSGWLEVMLGHFSDPEVALVAPRIVALDAESNALARYEHTRSSLDLGRREAAVHSRGPVSYVPSAALLVRRQ
ALLAVGGFDESMRVAEDVDLCWRLERAGRRLRYEPAAHVAHDHRVAFRAWFGRKVFYGTGAAPLARRHGPAAVSPLSLPY
WTALAAVLFATLTRWGLLGGLVALATALVRLRRVFAGLDNPTRIAALYLARGFFAGLWRIASAMCRHYWPITLLAVLVSR
RVRRIAVTMAVADGLADWFTHRDAGGLDPVRYLVYKRLDDLAYGTGLWVGAARARSLDALRPAFSRR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI71994065, Length=228, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 51139; Mature: 51139

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHDRLPDGFGVRIDPRVRAYSGNRILIGGTPARVLRLAPEAAEMIGDGYLEVTGPKSAV
CCCCCCCCCCCEEECCCEEEECCCEEEECCCHHHHHHCCHHHHHHHCCCEEEECCCHHHH
VARRLLDSGVANPRPRLLPSTDDVTVVVPVHNNPEGLARMLAVLRGHHVIVVDDGSDQPV
HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCE
RIPETRGTRCRVTVLRHDTAHGPAAARNAGLRAATTEFVAFLDSDVVPRSGWLEVMLGHF
ECCCCCCCEEEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCC
SDPEVALVAPRIVALDAESNALARYEHTRSSLDLGRREAAVHSRGPVSYVPSAALLVRRQ
CCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
ALLAVGGFDESMRVAEDVDLCWRLERAGRRLRYEPAAHVAHDHRVAFRAWFGRKVFYGTG
HHHEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCHHHHHHHHCCEEEECCC
AAPLARRHGPAAVSPLSLPYWTALAAVLFATLTRWGLLGGLVALATALVRLRRVFAGLDN
CCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTRIAALYLARGFFAGLWRIASAMCRHYWPITLLAVLVSRRVRRIAVTMAVADGLADWFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRDAGGLDPVRYLVYKRLDDLAYGTGLWVGAARARSLDALRPAFSRR
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRHDRLPDGFGVRIDPRVRAYSGNRILIGGTPARVLRLAPEAAEMIGDGYLEVTGPKSAV
CCCCCCCCCCCEEECCCEEEECCCEEEECCCHHHHHHCCHHHHHHHCCCEEEECCCHHHH
VARRLLDSGVANPRPRLLPSTDDVTVVVPVHNNPEGLARMLAVLRGHHVIVVDDGSDQPV
HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCE
RIPETRGTRCRVTVLRHDTAHGPAAARNAGLRAATTEFVAFLDSDVVPRSGWLEVMLGHF
ECCCCCCCEEEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCC
SDPEVALVAPRIVALDAESNALARYEHTRSSLDLGRREAAVHSRGPVSYVPSAALLVRRQ
CCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
ALLAVGGFDESMRVAEDVDLCWRLERAGRRLRYEPAAHVAHDHRVAFRAWFGRKVFYGTG
HHHEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCHHHHHHHHCCEEEECCC
AAPLARRHGPAAVSPLSLPYWTALAAVLFATLTRWGLLGGLVALATALVRLRRVFAGLDN
CCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTRIAALYLARGFFAGLWRIASAMCRHYWPITLLAVLVSRRVRRIAVTMAVADGLADWFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRDAGGLDPVRYLVYKRLDDLAYGTGLWVGAARARSLDALRPAFSRR
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]