Click here to switch to the map view.

The map label for this gene is yrbE4B [C]

Identifier: 54027027

GI number: 54027027

Start: 5310657

End: 5311520

Strand: Reverse

Name: yrbE4B [C]

Synonym: nfa50530

Alternate gene names: 54027027

Gene position: 5311520-5310657 (Counterclockwise)

Preceding gene: 54027028

Following gene: 54027026

Centisome position: 88.21

GC content: 67.48

Gene sequence:

>864_bases
GTGGGATCGAAATACACGCCGCCCGCCCTGCGGCCCGTGCGGGTCGTCGGCGCCGCGGTCGCCGTGCCCTACCAGGCCAA
CCAGCGGCTCGGGCACCAGGCCATCACGTTCTTCCAGGCACTGGGTGCCGTCCCGTTCGTGCTCAAGCACTACCGCAAGG
AGGTGCTGCGGCTCACCGCCGACGTGGGCTGGGGCAACGGCTCGCTGGTGGTGGGCGGCGGCACCATCGGCGTCGTGGTC
ATCCTGTGCGCCTTCGGCGGCATCACCGTGGGCATGGAGTCGTTCAACGCGCTCAACCTGCTCACGATGGGCCCGCTCAC
CGGCGCCATCTCCGGGTTCGCGACCACCCGCGAACTCGCGCCCATCCTGGCCACGCTGGCCTTCGCCATCCAGGCAGGCT
GCCGGTTCACCGCGCAGCTGGGCTCGATGCGGATCTCGGAGGAGATCGACGCGCTGGAGTCGATCGCGATCCGGCCGCTG
CCGTACCTGGTCAGCACACGGATGATCGCCGCGACGCTGACGATCGTCCCGCTCTACACCATCGGCCTGGCGACGGCGTA
CCTGGCGACCAAGCTGTCGGTGCTGTTCCTGGGGGGCACCTCGGCGGGCACCTACGACCACTACTTCTTCCAGTTCCTCA
TCGGCACGGACGTGTTCTTCTCGCTGCTCAAGGTCGTGATCTTCGTGCTGCTGGCGACCTTCATCCAGTGCTACTACGGC
TATGTCGCCACCGGCGGGCCCGAAGGTGTCGGGGTGGCCGCCGGGCGCGCGATCAAGATGGTGATCGTCGTGATGGTCTT
CGCGAATCTGTTCCTGACACTTGCCATCTGGGGCATCGACCCCGGCTTCCGGATCTCGGGATAG

Upstream 100 bases:

>100_bases
GTGAACTCCGCGGTGGTCACCTCGGCGCTGATGTTGTTCGCCACCAACATCATTCTCACCCAGCTGTACAACACGCTGTT
CCCCACGAAGGTGATCTGAG

Downstream 100 bases:

>100_bases
GGGGAAACGATGCTTCTCGATCCCAGTGGCCGCGGCCCGACCGCGCGCCAACTCTCCCTGGCCGGGCTCGCGATGATCCT
GGCCACCCTGCTGGTGCTCG

Product: putative YrbE family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MGSKYTPPALRPVRVVGAAVAVPYQANQRLGHQAITFFQALGAVPFVLKHYRKEVLRLTADVGWGNGSLVVGGGTIGVVV
ILCAFGGITVGMESFNALNLLTMGPLTGAISGFATTRELAPILATLAFAIQAGCRFTAQLGSMRISEEIDALESIAIRPL
PYLVSTRMIAATLTIVPLYTIGLATAYLATKLSVLFLGGTSAGTYDHYFFQFLIGTDVFFSLLKVVIFVLLATFIQCYYG
YVATGGPEGVGVAAGRAIKMVIVVMVFANLFLTLAIWGIDPGFRISG

Sequences:

>Translated_287_residues
MGSKYTPPALRPVRVVGAAVAVPYQANQRLGHQAITFFQALGAVPFVLKHYRKEVLRLTADVGWGNGSLVVGGGTIGVVV
ILCAFGGITVGMESFNALNLLTMGPLTGAISGFATTRELAPILATLAFAIQAGCRFTAQLGSMRISEEIDALESIAIRPL
PYLVSTRMIAATLTIVPLYTIGLATAYLATKLSVLFLGGTSAGTYDHYFFQFLIGTDVFFSLLKVVIFVLLATFIQCYYG
YVATGGPEGVGVAAGRAIKMVIVVMVFANLFLTLAIWGIDPGFRISG
>Mature_286_residues
GSKYTPPALRPVRVVGAAVAVPYQANQRLGHQAITFFQALGAVPFVLKHYRKEVLRLTADVGWGNGSLVVGGGTIGVVVI
LCAFGGITVGMESFNALNLLTMGPLTGAISGFATTRELAPILATLAFAIQAGCRFTAQLGSMRISEEIDALESIAIRPLP
YLVSTRMIAATLTIVPLYTIGLATAYLATKLSVLFLGGTSAGTYDHYFFQFLIGTDVFFSLLKVVIFVLLATFIQCYYGY
VATGGPEGVGVAAGRAIKMVIVVMVFANLFLTLAIWGIDPGFRISG

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=234, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 30386; Mature: 30255

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKYTPPALRPVRVVGAAVAVPYQANQRLGHQAITFFQALGAVPFVLKHYRKEVLRLTA
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DVGWGNGSLVVGGGTIGVVVILCAFGGITVGMESFNALNLLTMGPLTGAISGFATTRELA
HCCCCCCCEEEECHHHHHHHHHHHHCCHHCCHHCCCHHHEEEECCHHHHHHHHHHHHHHH
PILATLAFAIQAGCRFTAQLGSMRISEEIDALESIAIRPLPYLVSTRMIAATLTIVPLYT
HHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IGLATAYLATKLSVLFLGGTSAGTYDHYFFQFLIGTDVFFSLLKVVIFVLLATFIQCYYG
HHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVATGGPEGVGVAAGRAIKMVIVVMVFANLFLTLAIWGIDPGFRISG
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure 
GSKYTPPALRPVRVVGAAVAVPYQANQRLGHQAITFFQALGAVPFVLKHYRKEVLRLTA
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DVGWGNGSLVVGGGTIGVVVILCAFGGITVGMESFNALNLLTMGPLTGAISGFATTRELA
HCCCCCCCEEEECHHHHHHHHHHHHCCHHCCHHCCCHHHEEEECCHHHHHHHHHHHHHHH
PILATLAFAIQAGCRFTAQLGSMRISEEIDALESIAIRPLPYLVSTRMIAATLTIVPLYT
HHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IGLATAYLATKLSVLFLGGTSAGTYDHYFFQFLIGTDVFFSLLKVVIFVLLATFIQCYYG
HHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVATGGPEGVGVAAGRAIKMVIVVMVFANLFLTLAIWGIDPGFRISG
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA