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The map label for this gene is lprF [H]

Identifier: 54026905

GI number: 54026905

Start: 5152484

End: 5153290

Strand: Reverse

Name: lprF [H]

Synonym: nfa49310

Alternate gene names: 54026905

Gene position: 5153290-5152484 (Counterclockwise)

Preceding gene: 54026906

Following gene: 54026904

Centisome position: 85.59

GC content: 70.26

Gene sequence:

>807_bases
TTGCACCGTATTCGACCGCGCCGTCCGCGGCTGGCCGGGGCTGCTCCGGCGCTGCTGGCGGCGACCCTGATCACCGCGCT
GGTGGCGGGGTGCTCGTCCTCGGACGACGGCGCCGACACCGCGTCCGCGCCGGCCACCGGGCCGCTGCCCGATGCCGCGC
AGATCGTGCAGGAATCCGCGCGCACGACGCAGACGCTGCAGTCGGTCCACCTGGATCTGGATGTGAACAACATCCCGAAC
CTGCCGGTGGAGACCGTGTCGGCGGACGTGACCAACCAGCCGCAGGGTGCAGGCCAGGCCATGGGGGAGGCCAAGGTCAG
GACCGCGCCGGACGCGCCGTTCGTCGACACGAAGTTCATCGTGGTCGACAAGACGCTCTACACCGCGGTCAACAGCACCA
ACTACGCGCCGGTCGGCCCGGCCGAGAAGGTCTACGACCCGGGCGTGATCCTGGACAAGGACAAGGGCCTGGCGAACGTG
ATCGCCCAGGTGCAGAACCCGAAGGCCGAAGGCCGGGAGACCATCGAGGGCACCAACGTCGTCAAGGTCACCGGCACCAT
CGACGCCTCGGTGATCGACCCGATCGTCCCGCGCGTCGGGGAGAACGCGGGCACGCTGCCGATCACGCTGTGGATCGCCG
ACGTGCCGCCGCCGTCGACCTCGGCGTCGGTGCTGCCGTCGCAGGCGGCCTCGCCGGGTGACGGCCCGAACCTGGTGCGC
GCACTGGTCACCAAGGATCAGGGCACCGTCGAGGTGACCCTGTCGAAGTGGGCGGAGCCGGTCAACGTCGTCAAGCCGCA
GGGCTGA

Upstream 100 bases:

>100_bases
GGGCAGCGCCGCTGCCCTGTACAACGGCGTCGTACTCCGACGCCACGGAAACAATCCGGGGGTACATCTCGTGATCGACC
TGACCAGGCAAGGCCGTGCC

Downstream 100 bases:

>100_bases
CGGCGACCGCAGGCACCGCGTCGACCGGTCCGGGAGCGCGAGGGGGGACACGCCCTTCGCGCTGCCGGACCGGCGTCGTC
TGACGCGCATCTTCGCGCGG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MHRIRPRRPRLAGAAPALLAATLITALVAGCSSSDDGADTASAPATGPLPDAAQIVQESARTTQTLQSVHLDLDVNNIPN
LPVETVSADVTNQPQGAGQAMGEAKVRTAPDAPFVDTKFIVVDKTLYTAVNSTNYAPVGPAEKVYDPGVILDKDKGLANV
IAQVQNPKAEGRETIEGTNVVKVTGTIDASVIDPIVPRVGENAGTLPITLWIADVPPPSTSASVLPSQAASPGDGPNLVR
ALVTKDQGTVEVTLSKWAEPVNVVKPQG

Sequences:

>Translated_268_residues
MHRIRPRRPRLAGAAPALLAATLITALVAGCSSSDDGADTASAPATGPLPDAAQIVQESARTTQTLQSVHLDLDVNNIPN
LPVETVSADVTNQPQGAGQAMGEAKVRTAPDAPFVDTKFIVVDKTLYTAVNSTNYAPVGPAEKVYDPGVILDKDKGLANV
IAQVQNPKAEGRETIEGTNVVKVTGTIDASVIDPIVPRVGENAGTLPITLWIADVPPPSTSASVLPSQAASPGDGPNLVR
ALVTKDQGTVEVTLSKWAEPVNVVKPQG
>Mature_268_residues
MHRIRPRRPRLAGAAPALLAATLITALVAGCSSSDDGADTASAPATGPLPDAAQIVQESARTTQTLQSVHLDLDVNNIPN
LPVETVSADVTNQPQGAGQAMGEAKVRTAPDAPFVDTKFIVVDKTLYTAVNSTNYAPVGPAEKVYDPGVILDKDKGLANV
IAQVQNPKAEGRETIEGTNVVKVTGTIDASVIDPIVPRVGENAGTLPITLWIADVPPPSTSASVLPSQAASPGDGPNLVR
ALVTKDQGTVEVTLSKWAEPVNVVKPQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lppX/lprAFG lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009830
- ProDom:   PD017293 [H]

Pfam domain/function: PF07161 DUF1396 [H]

EC number: NA

Molecular weight: Translated: 27678; Mature: 27678

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRIRPRRPRLAGAAPALLAATLITALVAGCSSSDDGADTASAPATGPLPDAAQIVQESA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RTTQTLQSVHLDLDVNNIPNLPVETVSADVTNQPQGAGQAMGEAKVRTAPDAPFVDTKFI
HHHHHHHHHEEEEECCCCCCCCHHHEECCCCCCCCCCHHHHCCCEEECCCCCCCCCEEEE
VVDKTLYTAVNSTNYAPVGPAEKVYDPGVILDKDKGLANVIAQVQNPKAEGRETIEGTNV
EECHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCE
VKVTGTIDASVIDPIVPRVGENAGTLPITLWIADVPPPSTSASVLPSQAASPGDGPNLVR
EEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
ALVTKDQGTVEVTLSKWAEPVNVVKPQG
HHHCCCCCEEEEEHHHCCCCCCCCCCCC
>Mature Secondary Structure
MHRIRPRRPRLAGAAPALLAATLITALVAGCSSSDDGADTASAPATGPLPDAAQIVQESA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RTTQTLQSVHLDLDVNNIPNLPVETVSADVTNQPQGAGQAMGEAKVRTAPDAPFVDTKFI
HHHHHHHHHEEEEECCCCCCCCHHHEECCCCCCCCCCHHHHCCCEEECCCCCCCCCEEEE
VVDKTLYTAVNSTNYAPVGPAEKVYDPGVILDKDKGLANVIAQVQNPKAEGRETIEGTNV
EECHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCE
VKVTGTIDASVIDPIVPRVGENAGTLPITLWIADVPPPSTSASVLPSQAASPGDGPNLVR
EEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
ALVTKDQGTVEVTLSKWAEPVNVVKPQG
HHHCCCCCEEEEEHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]