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The map label for this gene is 54026788

Identifier: 54026788

GI number: 54026788

Start: 5028823

End: 5029398

Strand: Reverse

Name: 54026788

Synonym: nfa48140

Alternate gene names: NA

Gene position: 5029398-5028823 (Counterclockwise)

Preceding gene: 54026790

Following gene: 54026787

Centisome position: 83.53

GC content: 75.0

Gene sequence:

>576_bases
ATGACCGTGGGACCGCGCGACCGGCTGATCGAAGGCACCATCGCCCTGGTGCGCGAGCAGGGCGTGCAGGGCGCCGGACT
CGCCGCCCTGCTCGAACGCACCGGCACCTCGCGCAACTCGCTCTACCAGCACTTCCCGGCGGGCAAGAGCGAACTGGTCG
AGGTGTCCACCCGGGTCGCCGCCGGGCGCCTGTCCGCCTACCTGGAGCGGGTGACGGCGACCGGGACGCCCGCCGACTGG
GTGACCGCACTGGTGGCCTGGGGCAAGCGGCTGCTGGAGTCCAGCGAGTTCACCGCGGGCTGCCCGGTGGTCGGCGCGGC
ACTGGCCGAATCCGAGCCCGGCGTGCAGGCCGCCGCCGCCGACGCCTTCGCCGACTGGACCGGCAAGCTCGCCGCCGCGC
TGGCCGGCACCGGTATCCCCGCGGACCGGGCGCGGTCGCTGGCGGGGTTCGCCTTCAGCTCGGTCGAGGGCGCGATCGTG
CTGGCCAGGGCGAGCAAGTCGATCCGCCCGCTCGACGAGGTGGCGGAGAATCTGCGCGTGCTGCTGGCCGCGGAGACGGC
GGGGCCGGGCCGGTAA

Upstream 100 bases:

>100_bases
TCACGTCCTTTCGGTGAACCGATCGGTCCACATCTGCGATGATTGCAACATGGACCGATCGGTTCACGCAAGCGCCCGGC
ACGGCGGAGGAGGACGGCGG

Downstream 100 bases:

>100_bases
CCCCGTGCGCCGCACGCCACCGGCGCCCCCATAGACTGAGGCCGTGACGCAGACGACCGCCTCTGTCAATACCCAGTCTC
TCGGTGAGCTCGATCCCGAG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MTVGPRDRLIEGTIALVREQGVQGAGLAALLERTGTSRNSLYQHFPAGKSELVEVSTRVAAGRLSAYLERVTATGTPADW
VTALVAWGKRLLESSEFTAGCPVVGAALAESEPGVQAAAADAFADWTGKLAAALAGTGIPADRARSLAGFAFSSVEGAIV
LARASKSIRPLDEVAENLRVLLAAETAGPGR

Sequences:

>Translated_191_residues
MTVGPRDRLIEGTIALVREQGVQGAGLAALLERTGTSRNSLYQHFPAGKSELVEVSTRVAAGRLSAYLERVTATGTPADW
VTALVAWGKRLLESSEFTAGCPVVGAALAESEPGVQAAAADAFADWTGKLAAALAGTGIPADRARSLAGFAFSSVEGAIV
LARASKSIRPLDEVAENLRVLLAAETAGPGR
>Mature_190_residues
TVGPRDRLIEGTIALVREQGVQGAGLAALLERTGTSRNSLYQHFPAGKSELVEVSTRVAAGRLSAYLERVTATGTPADWV
TALVAWGKRLLESSEFTAGCPVVGAALAESEPGVQAAAADAFADWTGKLAAALAGTGIPADRARSLAGFAFSSVEGAIVL
ARASKSIRPLDEVAENLRVLLAAETAGPGR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 19627; Mature: 19496

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVGPRDRLIEGTIALVREQGVQGAGLAALLERTGTSRNSLYQHFPAGKSELVEVSTRVA
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
AGRLSAYLERVTATGTPADWVTALVAWGKRLLESSEFTAGCPVVGAALAESEPGVQAAAA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHH
DAFADWTGKLAAALAGTGIPADRARSLAGFAFSSVEGAIVLARASKSIRPLDEVAENLRV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHEE
LLAAETAGPGR
EEEECCCCCCC
>Mature Secondary Structure 
TVGPRDRLIEGTIALVREQGVQGAGLAALLERTGTSRNSLYQHFPAGKSELVEVSTRVA
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
AGRLSAYLERVTATGTPADWVTALVAWGKRLLESSEFTAGCPVVGAALAESEPGVQAAAA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHH
DAFADWTGKLAAALAGTGIPADRARSLAGFAFSSVEGAIVLARASKSIRPLDEVAENLRV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHEE
LLAAETAGPGR
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]